Plant FIBer expression Database

Lus10001585 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14850 750 / 0 NUP155 nucleoporin 155 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003700
[exp]
1058 / 0 AT1G14850 811 / 0.0 nucleoporin 155 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G134800
[exp]
798 / 0 AT1G14850 2053 / 0.0 nucleoporin 155 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF08801 Nucleoporin_N Nup133 N terminal like
Representative CDS sequence
>Lus10001585 pacid=23169290 polypeptide=Lus10001585 locus=Lus10001585.g ID=Lus10001585.BGIv1.0 annot-version=v1.0
ATGTCGGGCGACGAGGAGCTGTTGATCAGAGACGTCAAGAATGCTGGCTTGGTGGCGAGCGATCGCATTGGGCGGGAGCTCTCTTCTAAGCTCGACCTCG
AAGAAGCCCTAGAAGCTTCCCGATACGCTAGCCATCCTTACTCCACGCATCGTAGAGAGTGGCCTCCTTTGGTTGAGGTGGCAAATACATGGGATCTGCC
TTCTGCACTTATCGATAGGTACAATTCGACTGGTCGAGAAGGGACTGCTTTCTGTGGGATATTTCCGGAGATACGGCGTGCATGGGCGTCGCTCGATAAT
TCCTTGTTTCTATGGCGGTTTGATAAGTGGGATGGTCACTGCTCTGAATACAACACCGAAGAACAAGTCATTTGTGCAGTTGGCCTTGCTAAAGCCAAAC
CAGGTGTTTTTGTTGAAGCAATCCAGTACCTCTTAGTCCTAGCAACTCCTGCTGAGTTGATCCTTGTAGGAGTTTGCTGCTCTAGTGGGGCAGACGGTCA
TGATCCCTATGCAGAGGTTTCGCTGCAACCTTTGCCAGACTATTCAGTACCATCTGATGGGGTCACCATGACTTGTATCGTTTCAACTGAAAATGGCCGT
ATCTTCTTTGGTGGGCGTGAAGGCCATATTTATGAGTTGCAGTACAGTACTGGCTCTGGGTGGCATAAGAGATGTCGGAAAGTTTGCCTTACTGCTGGAG
TTGGTAGTGTGATTTCTAGGTGGATTTTGCCTAATGTATTCAAGTTTGGAGCTGTTGACACCATTGTCGAGATGGTTTTCGACAATGAACGGCATATTTT
ATATGCCCGAACTGAAGATATGAAGCTTCAAGTTTTCTCCGTGGACCCGAGTATAGATGGGTCTGTGAAGAAGGTAGCAGAAGAAAGGAATTTGTTCAAT
GGAAGTAGGCAATCAACAGGATCAAGGACCCCGGGCGGAACGGGAAAGTCATCAGTTGTTTGCATTGCGCCATTATCCTCATTGGAGTCCAAGTCTGTGC
ACTTGGTTGCTATTCTATCTGACGGCAGAAGGATGTTTCTTTCCACATCTTCATCAACCGGTGGGAATGTCGAAAGTTGGAAGCCACAGTGTTTGAAAGT
CGTGGCAACTCGGCCTTCTCCTCCTCTAGGGGTTAGTAGAGGACTCACGTTTGGAGCTGTATCCCTCGCGAACAGAACCCCAAACGAGGATCTTTCGTTA
AAGGTCGAAGCAGGATTCTATTCTACCGGAACTCTTGTCCTCTCCGACTCATCACCAGCCACCATGACTTCTCTTGTAGTTGTGAGCAAAGACTCGAGTT
CTCATTCCTCTGGATCTGGTAGTTTGGGCATCACAGCAAGGAGTTCTCGTGCACTTAAGGAACTCGTCTCTTCCATACCCGTTGAAGGCCGGATGCTCTT
TGTAGCAGACGTTCTACCTTCTCCAGATACAGCTTCAACTGTGCAGTCTCTATATGGCGAACCTGAGATTTTTGGGTTTAATAACACAGGAGAGTCCTGT
GAAAAGGCATCTGCCAAGCTATGGGCTAGAGGTGATCTTTCCACCCAGCATATACTGCCAAGGAGGAGAATCGTTCTGTTCAGCACTATGGGAATGATGG
AAGTTGCGTTCAACCGACCGGTGGATATTCTAAGGAAGTTGCTCGAATCCAATTTGTCCAGGCAATGA
AA sequence
>Lus10001585 pacid=23169290 polypeptide=Lus10001585 locus=Lus10001585.g ID=Lus10001585.BGIv1.0 annot-version=v1.0
MSGDEELLIRDVKNAGLVASDRIGRELSSKLDLEEALEASRYASHPYSTHRREWPPLVEVANTWDLPSALIDRYNSTGREGTAFCGIFPEIRRAWASLDN
SLFLWRFDKWDGHCSEYNTEEQVICAVGLAKAKPGVFVEAIQYLLVLATPAELILVGVCCSSGADGHDPYAEVSLQPLPDYSVPSDGVTMTCIVSTENGR
IFFGGREGHIYELQYSTGSGWHKRCRKVCLTAGVGSVISRWILPNVFKFGAVDTIVEMVFDNERHILYARTEDMKLQVFSVDPSIDGSVKKVAEERNLFN
GSRQSTGSRTPGGTGKSSVVCIAPLSSLESKSVHLVAILSDGRRMFLSTSSSTGGNVESWKPQCLKVVATRPSPPLGVSRGLTFGAVSLANRTPNEDLSL
KVEAGFYSTGTLVLSDSSPATMTSLVVVSKDSSSHSSGSGSLGITARSSRALKELVSSIPVEGRMLFVADVLPSPDTASTVQSLYGEPEIFGFNNTGESC
EKASAKLWARGDLSTQHILPRRRIVLFSTMGMMEVAFNRPVDILRKLLESNLSRQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G14850 NUP155 nucleoporin 155 (.1) Lus10001585
[exp]
0 1
AT1G14850 NUP155 nucleoporin 155 (.1) Lus10003700
[exp]
1.0 0.9912
AT5G13680 AtELP1, ELO2, A... ELONGATA 2, ABA-OVERLY SENSITI... Lus10023426
[exp]
1.4 0.9691
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Lus10043477
[exp]
2.4 0.9664
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Lus10022944
[exp]
3.2 0.9627
AT5G11560 catalytics (.1) Lus10022143
[exp]
3.7 0.9553
AT2G38770 EMB2765 EMBRYO DEFECTIVE 2765, P-loop ... Lus10019778
[exp]
4.9 0.9574
AT2G16880 Pentatricopeptide repeat (PPR)... Lus10036506
[exp]
4.9 0.9516
AT5G40480 EMB3012 embryo defective 3012 (.1) Lus10022271
[exp]
4.9 0.9630
AT3G14120 unknown protein Lus10037684
[exp]
6.0 0.9505
AT1G80070 EMB33, EMB177, ... ABNORMAL SUSPENSOR 2, EMBRYO D... Lus10023129
[exp]
8.5 0.9456

Lus10001585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.