Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14850 899 / 0 NUP155 nucleoporin 155 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003701 [exp] 1301 / 0 AT1G14850 990 / 0.0 nucleoporin 155 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134800 [exp] 1014 / 0 AT1G14850 2053 / 0.0 nucleoporin 155 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03177 [flax] [poplar] Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal
Representative CDS sequence Show only first row Show all	>Lus10001586 pacid=23169278 polypeptide=Lus10001586 locus=Lus10001586.g ID=Lus10001586.BGIv1.0 annot-version=v1.0 ATGGGGGACCCGACTGGCTCGATATTGTATGGTTCGGACTTAGATGCTGGTGACAGAAATTTCGTGAGAAACTTATTCGGTACCTACACTCAAAATGCTG ATGGCAGTGTGCCACCGGCAAATAAAAGGCAGCGCTTACCATATAGTCATGTTGAACTAGCAGCAATGGAGGTTAGGGCGATGGAGTGCGTTAGACAATT GCTTCTTCGATCTGGCGAAGCTCTCTTTTTGTTACAGCTTCTTTCTCAGCATCATGTAACACGCTTGGTTCAAGGGTTTGATGCTACCCAAAGGCAGGCA TTGATTCATTTGACATTCCATCAGCTAGTTTGTTCCGAAGAGGGTGACCGGATAGCCACTGTGCTAATAGCTGGATTAATGGAGTATTATACAGGTCCTG ATGGCAGGGGAACAGTTGATGATATTAGTGGGAGATTTCGTGAAGGTTGTCCGAGCTATTTCAAGGAGTCTGATCACAAGTTCTTCTTGGCCGTTGAATG TCTTGGAAGAGCTGCTGTAACGTCTAATCCTGTTGAGAAGGGGAATCTTGCCAGAGAGGCATTTAGTTCTCTTAGTAAAGTTCCGGAATCTGCTGATTTG ATAACTGTATGCAAAAGATTTGAGGATTTGAGATTTTATGAAGCGGTTGTGCGGTTGCCTCTGCAGAAGGCTCAAGCTCTCGACCCTGCGGGGGATGCTT TCAATGACCAAATCGATACGGCAATGAAGGAATATGCACTTGCTCAACGTGTGCAGTGCTATGAGATAGTTGCTGGTGCTATGCGTTCCCTGAAAGCTGC AGGTGTTCTTGATCAGGCATCACGGAAGAAATACATCAGCCAAATCGTTCAGCTTGGTGTTCAATCATCTGACAAATTATTCCATGAGCACCTTTACATG ACTATGATCGATTTGGGCCTTGAAGATGAGCTGCTGGAATATGGTGGTGCCGACTTAGTTCCTTTCCTGCAAAGTGGTGGTAGGGGATCCTTGCAAGAGG TGCAAGCTCCTTCTGTGGGGAATTCTTCTCCTATCAGCCATTCAGGAACAACAATCCCTTCTAACCAGGTGAAGTACTTTGATCTTCTGGCACGCTATTA CGTCTTGAAGAGACAGCATGTACTGGCTGCTCATGTGCTGCTTAGACTCTCCGAAAGACGCTCTAACGATGCTGGGGGTGCACCTACTTTGGAACAGAGG CAGCGATATCTAAGTAACGCAGTTTTACAGGCAAAGAGTGCAAGTGATGGTGGCCCGGGCAGGGGTGCTCTTGATAGTGGGTTGTTAGATTTGCTTGATG CGAAGCTAAAAGTACTACGTTTCCAAATAAAAATAAAAGACGAACTCGAGTCTATAGCTTCTGCAACCGAAACCTCATCTCCCAGGATCGAGGAAGAACA GGACGGATCTGCCCCTGATGACGAAAACAACAACTACAACGTGGAGTTGGCAAACGTGGCACTTGAAAAGGCTAAAGAGCTATCCTTGGAGTTGAAGAGT ATAACTGAGCTATACAATGACTATGCAGTTCCTTTCGAACTTTGGGAGATATGCCTTGAAATGCTCTACTTCGCAAATTATGCTGTGGATGCCGATAGCA GTATAGTAAGAGAAACTTGGGCTAGACTCGTTGATCGAGCTCTTTCAAGAGGCGGAGTTGCCGAAGCCTGTTCGGTTTTGAAGAGTGTTGGCTCGAACAT ATATCCCGGAGATGACGCCATTCTGCCCTTAGAAACACTTTGCCTTCACCTTGAGAAGGCAGCACTGGAGAGAGCGGAATCTGGCGTTGAAATCGTTGGC GATGAAGACGTGCCAAGAGGTCTTATAGCTGCCTGCAAAGGCGCGACCGAGCCAGTATTGAATGCCTACGACCAACTATTATCAAATGGAGCTATTCTGC CGTCCCCAAACCTTAGGTTGCGGCTTCTTCAATCCGTCCTTGTGGTGCTACGTGAATGTGCCATGTCAGCATTTGCAGAGAGGATGGGCACCAGCTCAAC GGGAGCTTCCTTAATATTGGGCGGAACGTTCTCGTTGGAGCAAACTGCCGTCTTTAACCAGGGGATGCGCGATAAGATCTCGAGCGCAGCAAATAGGTAC ATGACAGAAATGAAACGGCTGCCACTTCCACAGAGCAAGACGGATGGAGTTTACAGAGGATTCAGGGAGCTGGAGAACTCCCTCATTAGTCCCTTCTCTT TCGATCGCTACTGA
AA sequence Show only first row Show all	>Lus10001586 pacid=23169278 polypeptide=Lus10001586 locus=Lus10001586.g ID=Lus10001586.BGIv1.0 annot-version=v1.0 MGDPTGSILYGSDLDAGDRNFVRNLFGTYTQNADGSVPPANKRQRLPYSHVELAAMEVRAMECVRQLLLRSGEALFLLQLLSQHHVTRLVQGFDATQRQA LIHLTFHQLVCSEEGDRIATVLIAGLMEYYTGPDGRGTVDDISGRFREGCPSYFKESDHKFFLAVECLGRAAVTSNPVEKGNLAREAFSSLSKVPESADL ITVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDTAMKEYALAQRVQCYEIVAGAMRSLKAAGVLDQASRKKYISQIVQLGVQSSDKLFHEHLYM TMIDLGLEDELLEYGGADLVPFLQSGGRGSLQEVQAPSVGNSSPISHSGTTIPSNQVKYFDLLARYYVLKRQHVLAAHVLLRLSERRSNDAGGAPTLEQR QRYLSNAVLQAKSASDGGPGRGALDSGLLDLLDAKLKVLRFQIKIKDELESIASATETSSPRIEEEQDGSAPDDENNNYNVELANVALEKAKELSLELKS ITELYNDYAVPFELWEICLEMLYFANYAVDADSSIVRETWARLVDRALSRGGVAEACSVLKSVGSNIYPGDDAILPLETLCLHLEKAALERAESGVEIVG DEDVPRGLIAACKGATEPVLNAYDQLLSNGAILPSPNLRLRLLQSVLVVLRECAMSAFAERMGTSSTGASLILGGTFSLEQTAVFNQGMRDKISSAANRY MTEMKRLPLPQSKTDGVYRGFRELENSLISPFSFDRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	1.0	0.9606
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003701 [exp]	1.4	0.9555
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	2.4	0.9533
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	5.0	0.9486
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10004489 [exp]	5.7	0.9312
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	5.7	0.9526
AT5G48240			unknown protein		Lus10036418 [exp]	6.7	0.9319
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	7.3	0.9408
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	8.5	0.9414
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	10.1	0.9074

Compare expression of checked genes

Lus10001586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.