Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01690 1029 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003702 [exp] 1326 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034578 [exp] 1169 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2) Lus10021813 [exp] 1127 / 0 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003679 [exp] 730 / 0 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134600 [exp] 1088 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G106700 [exp] 1075 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11916 [flax] [poplar] Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10001587 pacid=23169283 polypeptide=Lus10001587 locus=Lus10001587.g ID=Lus10001587.BGIv1.0 annot-version=v1.0 ATGGCCGACGCTCTGTCCGTGATTTCGGCCAACGTTCTCCGAAGTTTGTCCGATAAGCTTTACGAGAAGCGGAAGAATGCTGCGCTTGAGGTTGAAGGGA TAGTGAAGCAGCTGACTGCAGCTGGGGATCATGATAAGATATCGGCAGTGATTGATTTGTTGAAGAATGAGTATACTTACTCTCCGCAAGCCAATCACCG GAAGGGAGGGTTGATAGGTTTGGCTGCTGCAACTGTAGGGTTGACGACTGAAGCCGCCCAGCATCTCGAGCAAATTGTTCCACCGGTGCTTCATTCATTC TCGGACCAAGATAGTAGGGTTCGCTATTACGCTTGTGAAGCTCTATATAACATTGCAAAGGTTGTGAGAGGGGATTTCATAGTGTTCTTCAATCAAATAT TTGATGCTCTCTGCAAGCTTTCAGCAGATTCAGATGCTAATGTACAAAGTGCTGCACATCTGTTAGATCGCCTTGTTAAAGACATCATCACGGAGAGTGA TCAGTTCAGCATTGAAGAATTTATTCCTCTGCTGAGGGAACGTATGAACGTGCTGAATCCGTACGTGCGTCAATTCTTGGTAGGATGGATTACCGTTTTG GACAGCGTTCCAGACATAGACATGCTTGGTTTTCTTCCAGATTTTCTCGATGGTTTGTTCAATATGTTGAGCGACTCTAGCCATGAAATACGGCAACAAT CGGATTCTGCACTTTCAGAGTTTCTCCAAGAGATCAAGAATTCCCCATCTGTAGATTATGGCCGCATGGCCGAGATATTGGTGCAGAGAGCAGCTGCTTC TGACGAATTTACTCGGTTGACAGCTATCACATGGATAAATGAATTCGTTAAACTTGGTGGGGACCAACTTGTGCCGTACTATGCTGATATTCTTGGAGCA ATTTTGCCTTGCATATCGGACAAAGAAGAGAAGATTAGAGTGGTTGCTCGGGAAACGAATGAAGAGCTTCGGGCAATACAAACTGATCCCGCAGAAGGGT TTGATGTTGGTGCAATCCTCTCTATCGCAAGAAGACAACTATCTAGCGAGTCTGAGGCTACACAAATCGAGTCATTGCACTGGATTTCTGCTCTTTTGAA CAGGCATCGGGCTGATGTCTTGAACTTTCTTGATGACATATTTGACTGTCTTTTGAAAGCACTATCAGATCCTTCTGATCAGGTAGTCCTGCTTGTTCTC GAGGTTCATGCATGCATTGCCAAGGAGCCACAACATTTCCGCCAGCTAGTTGTCTTCTTGATGCACAGTTTCCATGTTGATACTTCTCTTCTGGAGAAGC GTGGAGCATTGATCATTCGACGTCTTTGTATGCTTCTGGATGCTGAAAGGGTGTATAGGGAATTGTCCAAAATACTCGAGGGGGAAGCCGACTTGGATTT TGCTTCTACAATGGTTCAGGCACTGAATTTGATTTTGCTTACGTCCTCTGAATTAGCCGAGCTTCGAGATCTGTTGAAACAGTCACTGACAAATGCCGCC GGGAGAGATTTGTTTCAATCTTTGTGTCCCTCGTCTAGACGATGCTTGATTGCTCTCGATTTTCGTGCGATCGCCCAGATGTACCAGCATGCCAGTGTGG TGATTCAGTCTCTACTAGAGGATGATATCAATGTGAAGTTCTTAGTGCAACTGGACAAACTGATTCGTTTGCTCGAGACACCGATTTTTGCTTACCTAAG GCTGCAGCTCCTTGAGCCTGGAAGATACACATGGTTGTTAAAAGCCTTGTACGGGCTCCTGATGTTGCTTCCTCAGCAAAGCGCTGCTTTTAAGATCCTA AGGACTCGATTGAAGACGGTACCTTCGTATTCCTTCAGTGGCGGGGACCAGATCAAGCGGACTTCTTCAGGGAACCCAAATTCTCGAAGTAACGGATCAC TAGTCTCAGAGGACAGCGATGTAGCAGTGCATCAGGAAGTGAGAATTTCTAATTCTCAGAACGGAATTAACTTCACCTCGAACTTGCAGCAGTTTGAGCA AGTTCAACGCCAACATCGTGTCCACACGAGAAAGCATGCACATACTCGGAACACTTCTACTTCATCCGTGAAGGTGGTGGTTCAACGGTCAGAAGAAGAA GAAGCGCAGCGGCCAACATCGTCTTCTTCTCCGTTGACGGTAGAAGTAAATAGGATGCTCTCAAGAACAAGGAAAGGGCCAGGGCAGTTGCAGCTATAA
AA sequence Show only first row Show all	>Lus10001587 pacid=23169283 polypeptide=Lus10001587 locus=Lus10001587.g ID=Lus10001587.BGIv1.0 annot-version=v1.0 MADALSVISANVLRSLSDKLYEKRKNAALEVEGIVKQLTAAGDHDKISAVIDLLKNEYTYSPQANHRKGGLIGLAAATVGLTTEAAQHLEQIVPPVLHSF SDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIITESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQSDSALSEFLQEIKNSPSVDYGRMAEILVQRAAASDEFTRLTAITWINEFVKLGGDQLVPYYADILGA ILPCISDKEEKIRVVARETNEELRAIQTDPAEGFDVGAILSIARRQLSSESEATQIESLHWISALLNRHRADVLNFLDDIFDCLLKALSDPSDQVVLLVL EVHACIAKEPQHFRQLVVFLMHSFHVDTSLLEKRGALIIRRLCMLLDAERVYRELSKILEGEADLDFASTMVQALNLILLTSSELAELRDLLKQSLTNAA GRDLFQSLCPSSRRCLIALDFRAIAQMYQHASVVIQSLLEDDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKIL RTRLKTVPSYSFSGGDQIKRTSSGNPNSRSNGSLVSEDSDVAVHQEVRISNSQNGINFTSNLQQFEQVQRQHRVHTRKHAHTRNTSTSSVKVVVQRSEEE EAQRPTSSSSPLTVEVNRMLSRTRKGPGQLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01690			ARM repeat superfamily protein...		Lus10001587 [exp]	0	1
AT1G27350			Ribosome associated membrane p...		Lus10011355 [exp]	2.8	0.8243
AT2G01690			ARM repeat superfamily protein...		Lus10003702 [exp]	4.9	0.8539
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	6.2	0.8540
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	9.8	0.8173
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	15.9	0.8026
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	22.2	0.8365
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	25.0	0.8155
AT4G28260			unknown protein		Lus10018587 [exp]	28.5	0.8375
AT3G15358			unknown protein		Lus10011176 [exp]	33.5	0.8079
AT5G27860			unknown protein		Lus10020665 [exp]	35.9	0.7654

Compare expression of checked genes

Lus10001587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.