Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 679 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 382 / 4e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 265 / 4e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 245 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 244 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 242 / 1e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 241 / 2e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 235 / 1e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 237 / 3e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 229 / 7e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003703 [exp] 376 / 6e-128 AT1G77360 317 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 363 / 3e-118 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 270 / 6e-83 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 263 / 4e-80 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 248 / 3e-73 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 239 / 4e-70 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 233 / 1e-67 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 225 / 1e-65 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 222 / 2e-64 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181900 [exp] 706 / 0 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 379 / 1e-124 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 275 / 6e-85 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 264 / 3e-79 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 252 / 1e-74 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 246 / 1e-73 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 222 / 1e-64 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 215 / 2e-62 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 214 / 1e-61 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 212 / 2e-60 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10001588 pacid=23169280 polypeptide=Lus10001588 locus=Lus10001588.g ID=Lus10001588.BGIv1.0 annot-version=v1.0 ATGTCGACCCCAGCTGTAACTCTCGACACAGCCCTAGATCAGAGCGGGGTTCGAGTCTCAACCGAAGTAGTTGAATCCGTGCTTAAGAGATTCGAAAATG CCGGGATGCTGGCATTCCGATTCTTCGAATGGGCCGATAACCAGCGCCATTACGAACACAGCATCAGAGCTTACCACACGATGATCGAGTCGCTTTCCAA GATAAGGCAGTACAGGCTGATGTGGGATCTCGTGAATTCTATGAAGAGCAAGAGGATGTTGAACGTTGAGACGTTTTGCATCATCATGAGGAAGTATGCT CGAGCTAAGAAGGTCGAAGAAGCTGTGTACGCTTTCAATGTGATGGAGAAGTACGATGTGCCGCAAAATTTGGCTGCTTTCAATGGCTTGCTTAGTGCTC TGTGCAAGTCGCAGAATGTGAGGAAAGCTCAAGAATTGTTTGACGGCATGAAGGATAAGTTCGTTCCTGATTCGAAGACTTATAGTATACTGTTGGAAGG ATGGGGGAGAGCTCCGGATTTAACGAAAGCGAGGGAGATTTTTCGAGAAATGGTTAACGATGGATGTGAACCTGATGTTGTAACTTATGGTATTATGGTG AATCTTCTCTGTAAAGCTGGGAGGGTTGATGAAGCGTTGGGAATCGTGAGGGAAATGAACGATAAGGTATGTAAGCCGACACCTTTTATATACAGCGTTC TGGTTCATATGTACGGGAATGAAGGCCGAATCGAGGAAGCTGTTGGTACGTTCCTGGAAATGGAAAGGGAAGGGATCAAAGCTGATGTAGTTGTGTATAA TGCTTTGGTTGGAGCTTTCTGCAAGGTGAAGAAACACCAGAATGTGTATAGGGTCCTTAAGGAGATGGAATCGAAAGGTGTACAGTGTAATTCGAGAACA TACAATATTATTCTAAACAGCTTGATTGACTGTGGCAAGACGGATGAAGCTTTCGCAGTTTTCCGCAGCATGATCAAGGTGTGTGATCCGGATGCGGATA CTTACACGATGATGATAAAGATGTTCTGCGAGATTAAGGATGTGACGATGGCGCTCAAAGTTTGGGAGTATATGAAGAGAAAGCAGTTTATTCCTAGTTT GCATACGTTTTCGGTTCTTATAAACGGACTTTGCGAGAAGGGGGATGTGACCCGGGCTTGTGTTTTGTTGGAAGATATGATTGAGAAGGGGATTCAACCT TCTGGTACGACATTTGGTAGGTTGAGGCAGTTGCTTGTGAAAGAAGGAAGGGAGGATGTGGTTAAATTCCTTAACGAGAAGAAACAAAAAGAAAATGGGA ACACGTCGTCGGCGGCAGTCACCGCCGGCAGCATTAATAATAATCAGTTAAGCCAGAAGCTGCTCTTTGAAGACCACAAGGAGAAACCCTTCCTGTCACG TGAGGTGGTCAGGGACATCATCATCGGACTCTCCTACGGCCTCACCGTCCCTTTCGCCCTCGCCGCCAGCTTGTCCGGCGTCGAGGCCACTTCCCAACTT ATCCTCGTCGCCGGCGTTGCTGAGGTGGCTGCTGGCGCCATCTCCATGGGCCTTGGAGGGTACTTGGCCGCCCATAGCGAAATCGATCACTACATAAGGG AGATGAAACGCGAAGAGCAAGAGATAGTCCTCGTCCCGGATATTGGTTCGAGCTGGGGTTGGAGAAACCGGAGTCAACGAGGGCGATCAAGAGCTCGGCG ACGATTGCAGCCTCGTACGTGGTCAGAGGGATTTCCCTCTGCTTCCGTACATGGTGATCGCTTCCTCCGGCCGAGCTGTGGTCGCCTCCGTGGTGGTAAC CCTGGTGGTGCTGGTGGCGTTCGGCTTCGTCAAGGCTCATTTCACCGGCGACAAGAAGGCTCGATTCAAGACCGCAATCCAGACCGCAATTACTTGATGG CCTGA
AA sequence Show only first row Show all	>Lus10001588 pacid=23169280 polypeptide=Lus10001588 locus=Lus10001588.g ID=Lus10001588.BGIv1.0 annot-version=v1.0 MSTPAVTLDTALDQSGVRVSTEVVESVLKRFENAGMLAFRFFEWADNQRHYEHSIRAYHTMIESLSKIRQYRLMWDLVNSMKSKRMLNVETFCIIMRKYA RAKKVEEAVYAFNVMEKYDVPQNLAAFNGLLSALCKSQNVRKAQELFDGMKDKFVPDSKTYSILLEGWGRAPDLTKAREIFREMVNDGCEPDVVTYGIMV NLLCKAGRVDEALGIVREMNDKVCKPTPFIYSVLVHMYGNEGRIEEAVGTFLEMEREGIKADVVVYNALVGAFCKVKKHQNVYRVLKEMESKGVQCNSRT YNIILNSLIDCGKTDEAFAVFRSMIKVCDPDADTYTMMIKMFCEIKDVTMALKVWEYMKRKQFIPSLHTFSVLINGLCEKGDVTRACVLLEDMIEKGIQP SGTTFGRLRQLLVKEGREDVVKFLNEKKQKENGNTSSAAVTAGSINNNQLSQKLLFEDHKEKPFLSREVVRDIIIGLSYGLTVPFALAASLSGVEATSQL ILVAGVAEVAAGAISMGLGGYLAAHSEIDHYIREMKREEQEIVLVPDIGSSWGWRNRSQRGRSRARRRLQPRTWSEGFPSASVHGDRFLRPSCGRLRGGN PGGAGGVRLRQGSFHRRQEGSIQDRNPDRNYLMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10001588 [exp]	0	1
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	11.5	0.7487
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	15.0	0.7222
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	24.1	0.7236
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	40.1	0.6916
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	46.3	0.7040
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	54.4	0.6780
AT3G09440			Heat shock protein 70 (Hsp 70)...		Lus10009071 [exp]	81.4	0.6428
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	89.7	0.6553
AT3G18310			unknown protein		Lus10025089 [exp]	105.8	0.6572
AT3G02900			unknown protein		Lus10009524 [exp]	114.1	0.6341

Compare expression of checked genes

Lus10001588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.