Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01770 332 / 2e-115 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021809 [exp] 372 / 1e-131 AT2G01770 413 / 3e-148 vacuolar iron transporter 1 (.1) Lus10003704 [exp] 214 / 7e-69 AT2G01770 315 / 1e-108 vacuolar iron transporter 1 (.1) Lus10003706 [exp] 125 / 2e-34 AT2G01770 115 / 1e-30 vacuolar iron transporter 1 (.1) Lus10001588 [exp] 92 / 1e-20 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034583 [exp] 0 / 1 AT2G01770 317 / 2e-111 vacuolar iron transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104200 [exp] 329 / 2e-114 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1) Potri.010G104100 [exp] 303 / 2e-104 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10001589 pacid=23169287 polypeptide=Lus10001589 locus=Lus10001589.g ID=Lus10001589.BGIv1.0 annot-version=v1.0 ATGGCGACAACACATCCAGCGAAGCTCGAGCCGGAAAAGCAGAACTTACTAAACCACCACAAGGAGAATCACTTCACCGCCGGAGATGCCGTCCGCGACA TCATCATTGGTGTCTCTGACGGCCTCACCGTCCCCTTCGCACTCGCTGCCGGCTTGTCCGGCGCCAACGCCCCTTCCTCCATCGTCCTCACCGCCCGCCT CGCCGAAGTTGCCGCCCGCGCCATGAAGTTGCCGCCGGCGCCATCTCCATGGGCCTCGGAGGGTGAGTATTTGGCGGCGAGGAGCGAGGCGGACCATTAC TCAAGAGAGCTGAAGAGGGAGCAGGAAGAGATCGTCGCCGTTCCTGATACAGAGGCGGCGGAGGTGGCAGAGATACTGGCGGAATACGGGATTGAGCCGC ATGAATACTCGCCGGTGGTTAACGCTCTCCGGAAGAAGCCTCAAGCTTGGCTTGATTTCATGATGAAGCAAGGACTTTTCCCAAACAGAGCTAATTGCAA GAAAAAAATTACCCTGTTCGAGCTGGGACTGGAGAAGCCGGATCCACAGAGAGCCGTTCGAAGTGCAATGACCATATCGGGATCGTACATAGTCGGAGGA TTAGTACCACTGATACCATACATGTTCATGCCGAAAGCTCAGGACGCGGTGATTGCATCCGTCATACTAACCCTAATAACTCTGCTACTGTTTGGATACG CAAAGGGTCGATTCACAGGGAGCCAGCCCTTCATCAGCGCATTCCAAACCGCTCTCATCGGGGCCATTGCTTCTGCTGCCGCTTTCGGCATTGCTAAAGC TGTACAATGA
AA sequence Show only first row Show all	>Lus10001589 pacid=23169287 polypeptide=Lus10001589 locus=Lus10001589.g ID=Lus10001589.BGIv1.0 annot-version=v1.0 MATTHPAKLEPEKQNLLNHHKENHFTAGDAVRDIIIGVSDGLTVPFALAAGLSGANAPSSIVLTARLAEVAARAMKLPPAPSPWASEGEYLAARSEADHY SRELKREQEEIVAVPDTEAAEVAEILAEYGIEPHEYSPVVNALRKKPQAWLDFMMKQGLFPNRANCKKKITLFELGLEKPDPQRAVRSAMTISGSYIVGG LVPLIPYMFMPKAQDAVIASVILTLITLLLFGYAKGRFTGSQPFISAFQTALIGAIASAAAFGIAKAVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	0	1
					Lus10029825 [exp]	1.7	0.9054
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10035186 [exp]	2.0	0.9237
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	2.8	0.9239
					Lus10029451 [exp]	4.5	0.8880
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	9.7	0.9025
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10000365 [exp]	9.8	0.8616
AT1G78860			D-mannose binding lectin prote...		Lus10022495 [exp]	11.5	0.8969
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	14.3	0.8984
AT2G44340			VQ motif-containing protein (....		Lus10021054 [exp]	17.2	0.8677
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	25.5	0.8762

Compare expression of checked genes

Lus10001589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.