Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67970 79 / 3e-17 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT5G16820 43 / 6e-05 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001591 [exp] 337 / 9e-117 AT1G67970 285 / 1e-93 heat shock transcription factor A8 (.1) Lus10003707 [exp] 313 / 1e-107 AT1G67970 282 / 2e-92 heat shock transcription factor A8 (.1) Lus10011065 [exp] 49 / 1e-06 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040091 [exp] 48 / 1e-06 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10000312 [exp] 47 / 2e-06 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10030956 [exp] 47 / 5e-06 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136800 [exp] 143 / 5e-41 AT1G67970 322 / 5e-108 heat shock transcription factor A8 (.1) Potri.010G104300 [exp] 139 / 1e-39 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1) Potri.001G138900 [exp] 49 / 6e-07 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 43 / 5e-05 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001590 pacid=23169284 polypeptide=Lus10001590 locus=Lus10001590.g ID=Lus10001590.BGIv1.0 annot-version=v1.0 ATGGAAACAAATCAGCAGCAGATGCTTTCGTTCTTGGTAATGGTTATGCAGCACCCGGGCTTTGTGGTTCAGCTACTTCACCCGAAAGAAAATAGCTGGA GGATGGCTGAACCAGGAGTCATAACCGAGCAAGTTGACGAACCGTCGGTTTCTGATGGAAGGATAGTGAGATACCAACCGCAAAAAGATCACAAAGTCGG CGAACCGGTGCACCAACCACAAATAGATGATTCAAACTTGTCGTGGGATTGGATGAAAGATTTCTCCATAAGTTCCGATTTCATGAAGTTGCTTTCAGAA CAGAATCTTTCTGCAGGAAATAACAGTCCGTTTATTGTACCGGAACTTCAGGACGATAGTTCTTGGGAGCAGATTCTCCGGGCCACTTCTTCCCTCGCTG ATAATCGCGATGAAAATGGAGATGGTGAAGAGGAGGAGGACGATGATGCCCAAGTTGAAACGGAACGGAGTTTGCTTAGTACGTTGATGAGCACCGATCT TTTGGAGGAACAAATGAGAGAATTCACTGCACTGGTGGGAGTTCCATCCTTGTGCTCGGTTTCTGAAACCGAGCGCAAGGAAGGAATGTAG
AA sequence Show only first row Show all	>Lus10001590 pacid=23169284 polypeptide=Lus10001590 locus=Lus10001590.g ID=Lus10001590.BGIv1.0 annot-version=v1.0 METNQQQMLSFLVMVMQHPGFVVQLLHPKENSWRMAEPGVITEQVDEPSVSDGRIVRYQPQKDHKVGEPVHQPQIDDSNLSWDWMKDFSISSDFMKLLSE QNLSAGNNSPFIVPELQDDSSWEQILRATSSLADNRDENGDGEEEEDDDAQVETERSLLSTLMSTDLLEEQMREFTALVGVPSLCSVSETERKEGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001590 [exp]	0	1
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	1.4	0.8416
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	3.0	0.7484
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	16.9	0.7353
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	18.6	0.7645
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	21.7	0.7640
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	28.2	0.7558
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	30.5	0.7604
AT1G35430			unknown protein		Lus10001289 [exp]	38.8	0.7061
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	39.0	0.7532
AT2G34585			unknown protein		Lus10038503 [exp]	47.1	0.7098

Compare expression of checked genes

Lus10001590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.