Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67970 259 / 8e-84 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT4G17750 206 / 5e-62 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT1G32330 202 / 1e-60 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 197 / 2e-58 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G22830 182 / 1e-53 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 182 / 7e-53 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 174 / 5e-51 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G54070 172 / 2e-50 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT5G03720 160 / 5e-45 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G51910 153 / 5e-44 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003707 [exp] 613 / 0 AT1G67970 282 / 2e-92 heat shock transcription factor A8 (.1) Lus10001590 [exp] 337 / 9e-117 AT1G67970 81 / 3e-18 heat shock transcription factor A8 (.1) Lus10011065 [exp] 216 / 9e-66 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 214 / 5e-65 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040091 [exp] 210 / 1e-63 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 208 / 9e-63 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040911 [exp] 193 / 3e-57 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10039376 [exp] 181 / 3e-53 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 179 / 1e-52 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104300 [exp] 363 / 3e-124 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1) Potri.008G136800 [exp] 362 / 1e-123 AT1G67970 322 / 5e-108 heat shock transcription factor A8 (.1) Potri.001G138900 [exp] 217 / 9e-66 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 209 / 5e-63 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.008G157600 [exp] 190 / 3e-57 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 189 / 5e-57 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 192 / 2e-56 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.005G214800 [exp] 186 / 2e-55 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 181 / 1e-53 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G148200 [exp] 173 / 4e-49 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10001591 pacid=23169272 polypeptide=Lus10001591 locus=Lus10001591.g ID=Lus10001591.BGIv1.0 annot-version=v1.0 ATGGTGAAATCCGGCGATGATGGAACCTCTCTGTCGATCACTCCCTTCTTGAAGAAATGCTACGATATGGTGGACGACGAATCCACCAACTCCGTAATTT CATGGTCTCCGAACAGCGACAGTTTCATCATATGGGACATGACTGAGTTCTCCGTCAATCTGCTGCCGGCCTACTTCAAGCACAGCAACGGCGCTAGCTT CGTTAGGCAGCTTAACATCTACGGATTTAGGAAAGTTGATCCGGACCGATGGGAATTTGCGAACGATGGATTTATCAGAGGTAAAAAGCATTTGCTCAAG AACATCTCCAGACGCAAGAACCCTCAAGGCTCAGGAAACCGGAGGGCAACAACACAGGAAAAGGAGAAGCCTGTTGAACCTAGTGAGGAAGTCGAGAAGG TAGACCTTTGGAAAGAGATAGAGAATCTGAAGATCGATAAAAACGCTGTGACTCAGGAGCTTGTTAAGCTCAGAAAACACCAGGAAACCTCCGATGAGAA GCTGCTTCTCTTGAGGGATCGTCTCAAAGGGATGGAAACAAATCAGCAGCAGATGCTTTCGTTCTTGGTAATGGTTATGCAGCACCCGGGCTTTGTGGTT CAGCTACTTCACCCGAAAGAAAATAGCTGGAGGATGGCTGAACCAGGAGTCATAACCGAGCAAGTTGACGAACCGTCGGTTTCTGATGGAAGGATAGTGA GATACCAACCGCAAAAAGATCACAAAGTCGGCGAACCGGTGCACCAACCACAAATAGATGATTCAAACTTGTCGTGGGATTGGATGAAAGATTTCTCCAT AAGTTCCGATTTCATGAAGTTGCTTTCAGAACAGAATCTTTCTGCAGGAAATAACAGTCCGTTTATTGTACCGGAACTTCAGGACGATAGTTCTTGGGAG CAGATTCTCCGGGCCACTTCTTCCCTCGCTGATAATCGCGATGAAAATGGAGATGGTGAAGAGGAGGAGGACGATGATGCCCAAGTTGAAACGGAACGGA GTTTGCTTAGTACGTTGATGAGCACCGATCTTTTGGAGGAACAAATGAGAGAATTCACTGCACTGGTGGGAGTTCCATCCTTGTGCTCGGTTTCTGAAAC CGAGCGCAAGGAAGGAATGTAG
AA sequence Show only first row Show all	>Lus10001591 pacid=23169272 polypeptide=Lus10001591 locus=Lus10001591.g ID=Lus10001591.BGIv1.0 annot-version=v1.0 MVKSGDDGTSLSITPFLKKCYDMVDDESTNSVISWSPNSDSFIIWDMTEFSVNLLPAYFKHSNGASFVRQLNIYGFRKVDPDRWEFANDGFIRGKKHLLK NISRRKNPQGSGNRRATTQEKEKPVEPSEEVEKVDLWKEIENLKIDKNAVTQELVKLRKHQETSDEKLLLLRDRLKGMETNQQQMLSFLVMVMQHPGFVV QLLHPKENSWRMAEPGVITEQVDEPSVSDGRIVRYQPQKDHKVGEPVHQPQIDDSNLSWDWMKDFSISSDFMKLLSEQNLSAGNNSPFIVPELQDDSSWE QILRATSSLADNRDENGDGEEEEDDDAQVETERSLLSTLMSTDLLEEQMREFTALVGVPSLCSVSETERKEGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	0	1
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	1.0	0.8495
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001590 [exp]	1.4	0.8416
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	3.9	0.8051
					Lus10012006 [exp]	4.0	0.7902
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	6.3	0.7825
AT1G35430			unknown protein		Lus10001289 [exp]	6.3	0.7803
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	10.6	0.7803
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10037063 [exp]	13.1	0.6779
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	13.4	0.7693
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10014121 [exp]	15.3	0.7268

Compare expression of checked genes

Lus10001591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.