Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23170 545 / 0 Protein of unknown function DUF2359, transmembrane (.1.2) AT1G70770 530 / 0 Protein of unknown function DUF2359, transmembrane (.1.2) AT3G11880 342 / 8e-112 Protein of unknown function DUF2359, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003709 [exp] 967 / 0 AT1G70770 614 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10034590 [exp] 763 / 0 AT1G23170 616 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10021774 [exp] 714 / 0 AT1G23170 584 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110500 [exp] 625 / 0 AT1G23170 529 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.017G124300 [exp] 553 / 0 AT1G23170 507 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.004G091100 [exp] 553 / 0 AT1G23170 508 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.008G131800 [exp] 531 / 0 AT1G23170 466 / 5e-161 Protein of unknown function DUF2359, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10151 [flax] [poplar] TMEM214 TMEM214, C-terminal, caspase 4 activator
Representative CDS sequence Show only first row Show all	>Lus10001593 pacid=23169282 polypeptide=Lus10001593 locus=Lus10001593.g ID=Lus10001593.BGIv1.0 annot-version=v1.0 ATGGAGTTCGCCAGCGAAGATCAGCAGATCGCCGCCGCAGTCGACGCCTCTAAGGCCATGGAAAATCCCGATCACGGCTGGCAGAAGGTGACCTACGCCA AGAAGCACCGCAAGCAGAAACCAGGTGCCGCCGCCGTCGCCGGGAAAATTAACGGGACGGTTGCACTGGGTGACGGCGAAAAGGGGAACGTGTTCCGGGG TTTGGAGCAGCAGTCGGAGGAGCGGCGCCGGAGGATTTTGGAATCGGAGAGATCTGCGATTGCAGCTGCCTCCTCCACTGCCGGCGCGGGGAGATCGAGG GTCCGATCTGATGACGATGATGACGAATACGACGATAGCGACGATGCTAGGGTTACCAAAGGCGATGAGAAGGGCAATGAGGAGAAGAAGGTGAAGCAGA AGAAGCCTAAGAAGCCGAAAATAACCGTTTCTGAAGCCGCTACTAAGATCGACGAGTCCGATCTCGCGGCTTTTCTTCTCGATATATCCGCTTCGTATGA GGGACAGCAGGAGATTCAGCTCATGAGATTTGCTGATTATTTTGGGAGGGCATTCTCAGCTGTGAGCTCGGCTCAGTTCCCATGGGTGAAGCTGTTCAGG GAGAATCCTATCACCAAAATTGTCGAGGTTCCTCTGTCGTACATTGCGGAACCCATATATAAGACATCAATTGACTGGATTTCTCAACGCTCTGTTGAGG CACTTGGGTCCTTTGTATTATGGTGTCTGGACAGTATCCTTGCGGATTTGGCAAGCCAGAATGTTGGTCCCAAAGCTGCCAAGAAGGGTGCGCAACAAGC ATCGTCAAAGTCCCAAGTTGCAATCTTTGTGGTTTTAGCAATGGTCTTGCGACGGAAACCTGACTCATTGGTCAGTGTGTTGCCGACATTGAAAGATTCC TCAAAGTATCAAGGGCAAGACAAACTCCAAGTTATCGCTTGGACCATTGCGCAGGCCTCTCAAGCAGATTTAGCTGTGGGGTTGCTCTCTTGGACACACA ACCTTTTGCCCATAGTGAGCGGGAAAAGCTCTAATCCACTGTCTAGAGATGTAATTTTGCAAGTGGTGGAGAAGATTTTAGCAGCTCCAAAAGCTAGGAC AATTTTACTAAATGGTGCTGTTAGGAAAGGGGAACGTCTAGTCCCACCTACTGCATTGGAGATGTTGCTTAGAGTTACCTTTCCTTCGTCTTCAACTAGA GTAAAGGCTACTGAGAGGTTCGAAGCAATATATCCCACCCTCAAAGAGGTGGCTCTTGCTGGCGCTGCTGGAAGTAAAGCTATGAGGCAAGTAGCACAGC AGACATTAAGCTTTTCTCTGAATGCGGCAGGTGAAGGCAATCCCGAGCTGTCCAAGGAAGCCGCTTCCATCACCGTCTGGTGTTTCACCCAAAATCCGGA GTGCTACAAGCAGTGGGTGAAGGTGTATCAGGACGATCTAAGAGCCAGCGTTGCGGTTCTCAAGAGACTCTCCGAGCAATGGAAGGAGCTCTCCGAGAAA CTTGCTCCTTTCGATCCGCTCAGGGAGACCATCCGAGATTTCAGGCAAAAGAACGAGAAAGCAACGGCGAAAGGACACAAAGACGACAAGGACCTAGCTC TCTACAAAGAATCGGACAAGTACTGCAAGGCGATACAAGGAAAGGTATCTCGAGGAAACGGCTGCCTGAAAGGAATGGCCATCGTCGTCGTTGCATTGGC CGTTGGTGCTGCCGTCACAACCCAGAACTTGGAGGACTGGGACTGGCAGAAACTCTCTGTGTTCGTCAACTCTCAGTTGTCTTACTGA
AA sequence Show only first row Show all	>Lus10001593 pacid=23169282 polypeptide=Lus10001593 locus=Lus10001593.g ID=Lus10001593.BGIv1.0 annot-version=v1.0 MEFASEDQQIAAAVDASKAMENPDHGWQKVTYAKKHRKQKPGAAAVAGKINGTVALGDGEKGNVFRGLEQQSEERRRRILESERSAIAAASSTAGAGRSR VRSDDDDDEYDDSDDARVTKGDEKGNEEKKVKQKKPKKPKITVSEAATKIDESDLAAFLLDISASYEGQQEIQLMRFADYFGRAFSAVSSAQFPWVKLFR ENPITKIVEVPLSYIAEPIYKTSIDWISQRSVEALGSFVLWCLDSILADLASQNVGPKAAKKGAQQASSKSQVAIFVVLAMVLRRKPDSLVSVLPTLKDS SKYQGQDKLQVIAWTIAQASQADLAVGLLSWTHNLLPIVSGKSSNPLSRDVILQVVEKILAAPKARTILLNGAVRKGERLVPPTALEMLLRVTFPSSSTR VKATERFEAIYPTLKEVALAGAAGSKAMRQVAQQTLSFSLNAAGEGNPELSKEAASITVWCFTQNPECYKQWVKVYQDDLRASVAVLKRLSEQWKELSEK LAPFDPLRETIRDFRQKNEKATAKGHKDDKDLALYKESDKYCKAIQGKVSRGNGCLKGMAIVVVALAVGAAVTTQNLEDWDWQKLSVFVNSQLSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	1.0	0.9826
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	2.4	0.9513
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	2.4	0.9612
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	2.8	0.9584
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	2.8	0.9631
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	6.0	0.9462
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	6.6	0.9279
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	6.7	0.9486
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	7.7	0.9542
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10005962 [exp]	7.9	0.9403

Compare expression of checked genes

Lus10001593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.