Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 167 / 6e-53 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 164 / 3e-51 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G70790 161 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70810 160 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 157 / 7e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G01540 156 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70800 152 / 9e-47 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 150 / 4e-46 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G73580 149 / 8e-46 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 145 / 2e-44 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003710 [exp] 275 / 1e-95 AT1G48590 158 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10021775 [exp] 212 / 3e-70 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 197 / 5e-65 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009684 [exp] 164 / 2e-50 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 160 / 5e-49 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10033585 [exp] 146 / 1e-44 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 144 / 1e-43 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 144 / 2e-43 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10018005 [exp] 134 / 1e-39 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131500 [exp] 187 / 1e-60 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 181 / 2e-58 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 163 / 3e-51 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 161 / 1e-50 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 139 / 7e-42 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 97 / 3e-25 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G372000 [exp] 98 / 2e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 97 / 5e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.016G005300 [exp] 93 / 5e-24 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 88 / 2e-20 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10001594 pacid=23169276 polypeptide=Lus10001594 locus=Lus10001594.g ID=Lus10001594.BGIv1.0 annot-version=v1.0 ATGGATCAGGGGATGCTGGGATTGCTCCGCCTCAGGATCAGAAAGGGGAAAAACCTCATCGTTCGAGATTTCGGCAGCGGCAGCAGCGACCCTTACATCA TCGTCACCTTAGGAACGCAGGCCAGTCCCATTTCTGGTCTTTTGACTGTTGAGTTTTGCCTCTTGTTAATGCTTTCTTTGACCTGGATTCCCAAGATAAA GCTCAAGACTAAAACGGTGAAGAATAACTGTAACCCGGAATGGAACGAGGAGCTCACCCTCTCCATCAAGAACCCTGATCTCCCCATCTTGCTCACGGTA TATGACAAGGACACTCTCAGCACCGACGACAAAATGGGAGAAGTGAAAATAAACCTGAAGCCATACGTGGATGCGCTCCGGATCGGAGCGAAGAACCTTC CCAACGGCTGCTGCATCAAGATCGTCCAGCCGACGGAACATAACCACTTAGCCGAGGAGAGCCGCATAACTTGGCACGAGGGGAAGCTCCTCCAGGACAT GGTTCTGAAACTGCAGCACGTAGAGTCCGGTGAACTGGACGTCCAGATTGAATGGATCGATGTCCCCGGTTGCAAGGGTCTCCTCTCCCATGATGGCGAG TTCAACTTCATATAG
AA sequence Show only first row Show all	>Lus10001594 pacid=23169276 polypeptide=Lus10001594 locus=Lus10001594.g ID=Lus10001594.BGIv1.0 annot-version=v1.0 MDQGMLGLLRLRIRKGKNLIVRDFGSGSSDPYIIVTLGTQASPISGLLTVEFCLLLMLSLTWIPKIKLKTKTVKNNCNPEWNEELTLSIKNPDLPILLTV YDKDTLSTDDKMGEVKINLKPYVDALRIGAKNLPNGCCIKIVQPTEHNHLAEESRITWHEGKLLQDMVLKLQHVESGELDVQIEWIDVPGCKGLLSHDGE FNFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	0	1
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	3.7	0.8881
					Lus10015620 [exp]	6.0	0.8422
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	6.0	0.8387
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	6.1	0.7769
					Lus10012752 [exp]	8.4	0.8003
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	9.7	0.8291
AT4G13200			unknown protein		Lus10011869 [exp]	14.1	0.8085
AT3G14880			unknown protein		Lus10039193 [exp]	15.3	0.7972
AT2G43990			unknown protein		Lus10008165 [exp]	15.4	0.8157
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	15.7	0.8407

Compare expression of checked genes

Lus10001594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.