Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 478 / 4e-168 Protein kinase superfamily protein (.1.2) AT4G23180 333 / 2e-108 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 331 / 2e-107 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G38830 322 / 4e-104 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G00960 311 / 2e-103 Protein kinase superfamily protein (.1) AT4G23230 315 / 3e-103 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23160 331 / 6e-103 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23270 318 / 7e-103 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G11530 317 / 5e-102 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G00970 316 / 9e-102 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003711 [exp] 670 / 0 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10018382 [exp] 348 / 6e-114 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 342 / 2e-111 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 329 / 1e-106 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007633 [exp] 324 / 9e-105 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10033752 [exp] 308 / 3e-102 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10010927 [exp] 312 / 4e-102 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10009631 [exp] 308 / 8e-102 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10038940 [exp] 307 / 1e-101 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132300 [exp] 518 / 0 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.010G109700 [exp] 516 / 0 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G026350 [exp] 337 / 8e-110 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024632 [exp] 325 / 5e-109 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 329 / 9e-107 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 328 / 3e-106 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.004G024404 [exp] 326 / 2e-105 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.006G071300 [exp] 318 / 2e-105 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G024500 [exp] 324 / 1e-104 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025800 [exp] 324 / 1e-104 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001595 pacid=23169279 polypeptide=Lus10001595 locus=Lus10001595.g ID=Lus10001595.BGIv1.0 annot-version=v1.0 ATGTCAAAGCCCAAGGGTTTCCTCCACAATCTGATGAAGCCTTTCAAGTTTGGCTCCAGAAAAGATGGGGAGAATGAAGGGGATTTGGAGAAGATTGCTG CACAGGAGAGGAAGCAGTTTGAATTCCAGACTTTGGTTTCAGCTACCAGAGATTTCCACCCGTCTCAAAAGCTTGGTGAAGGTGGGTTTGGACCCGTTTA CAAGGGAAAGCTGAGTGACGGTCGAGAGATTGCAGTGAAGAGACTTTCCCTCAGCTCTAGGCAAGGCAACACCGAGTTCACAACTGAAGCGAAGTTGTTG GCGAGGGTCCAGCATCGTAATGTTGTCAGCTTGTTAGGCTACTGCGTGCACGACACGGAGAAGCTGCTGGTTTACGAGTATGTTGCTCATGAGAGCCTCG ACAAGCTTCTTTTCAAGTCTAATAGTAAAACGTGTCTTGATTGGAAGCAAAGGTTCGACATAATCATGGGCATCGCGCGGGGCCTGCAGTACCTCCATGA GGACTCGCACAACGTCATTATCCACCGTGACATCAAAGCTAGCAACATTTTGCTCGACGACAGATGGATACCTAAGATTGCAGATTTCGGGATGGCTCGC CTCTTCCCCGAAGATCAAACACACGTCAACACTCGTGTAGTTGGTACTAATGGTTATATGGCTCCAGAGTATGTCATGCACGGACGTCTATCGGTGAAAG CTGATGTGTATAGCTTCGGTGTTTTGGTCTTGGAGCTCATCAGCGGGCAGAAGAACTCAACCTTCACAAACGCAAATGCGGACTACAACCTACTGGAGTG GGCATACAAGCTCTACAAAGATGGCAAGAGCATGGACCTGATGGACCCGACACTAGTGACACCAGCAGCTTCCGAATTGGTCAAGACCTGCATTCACGTA GCACTGCTCTGCACACAAGGCGAGCCCAATTCACGGCCAACGATGAGACAGGTAGTTCTCTGGCTATCCAAGAAGCCCGGCCACCTGGAAGAGCCAACAA GGCCGGTGGTGCCCGGTTCACGGTACAGAAGATCACGTAGGCCCCATACAAGAACAGGAACGTCCTTGACTGCAGGGACATCTGGCCATTTCGGATCTCA TGGGTCCGATTCGAGCTCGAGCAGTAGTAGTACTACTACCGCAGCTGCATCAACTTCTTCAGCCTATAGTTCAGTCGCAAAAAGACCCGACCCGCATGGG AAACGGCCAATGTCTAGCTGA
AA sequence Show only first row Show all	>Lus10001595 pacid=23169279 polypeptide=Lus10001595 locus=Lus10001595.g ID=Lus10001595.BGIv1.0 annot-version=v1.0 MSKPKGFLHNLMKPFKFGSRKDGENEGDLEKIAAQERKQFEFQTLVSATRDFHPSQKLGEGGFGPVYKGKLSDGREIAVKRLSLSSRQGNTEFTTEAKLL ARVQHRNVVSLLGYCVHDTEKLLVYEYVAHESLDKLLFKSNSKTCLDWKQRFDIIMGIARGLQYLHEDSHNVIIHRDIKASNILLDDRWIPKIADFGMAR LFPEDQTHVNTRVVGTNGYMAPEYVMHGRLSVKADVYSFGVLVLELISGQKNSTFTNANADYNLLEWAYKLYKDGKSMDLMDPTLVTPAASELVKTCIHV ALLCTQGEPNSRPTMRQVVLWLSKKPGHLEEPTRPVVPGSRYRRSRRPHTRTGTSLTAGTSGHFGSHGSDSSSSSSSTTTAAASTSSAYSSVAKRPDPHG KRPMSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	0	1
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	4.2	0.8030
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	4.4	0.8055
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10034630 [exp]	6.6	0.7787
					Lus10033126 [exp]	6.7	0.7899
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	8.7	0.7741
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	9.3	0.6614
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	10.2	0.7672
AT1G16040			unknown protein		Lus10015585 [exp]	13.2	0.7701
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	13.6	0.7704
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	14.3	0.7501

Compare expression of checked genes

Lus10001595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.