Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76280 469 / 3e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G13040 81 / 8e-16 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 79 / 6e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 76 / 3e-14 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63070 72 / 5e-13 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 71 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 69 / 6e-12 PGR3 proton gradient regulation 3 (.1) AT1G12620 68 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 67 / 2e-11 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 67 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015530 [exp] 75 / 1e-13 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 74 / 2e-13 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041669 [exp] 70 / 3e-12 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 70 / 4e-12 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022290 [exp] 69 / 8e-12 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10042529 [exp] 68 / 2e-11 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 67 / 3e-11 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10019524 [exp] 67 / 4e-11 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042068 [exp] 67 / 5e-11 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047200 [exp] 393 / 9e-126 AT1G76280 563 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.001G276500 [exp] 82 / 6e-16 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G193900 [exp] 75 / 1e-13 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.017G032100 [exp] 73 / 2e-13 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 72 / 8e-13 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G137200 [exp] 71 / 2e-12 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G124900 [exp] 71 / 2e-12 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 70 / 3e-12 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 69 / 5e-12 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G046100 [exp] 69 / 5e-12 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001597 pacid=23169273 polypeptide=Lus10001597 locus=Lus10001597.g ID=Lus10001597.BGIv1.0 annot-version=v1.0 ATGTGTTCAGTCCCAGATGCAGGTTATGGCTTATTGAGTGAAGGCTTAAAATGTACAGAATCCGTTCAGCAACAGATAGTTGATTCACTGATATCAGGAA AGAGAGAAATCACCTCGAATTTGCTTGATGATCTTGTCAATGGTAGTGTTTCCTTGGGTGCCGATGACTTCAGTGATATTTTCAGATATTGTGCAAGATC GCCTGATCCTTTGTTTGCAATGGAGATTTGGAAGGTGATGGAGAAGAATAATGTTAATCCTAATAATTATAGCTATCTGTGTATGGTGAAAGCACTATGG AGAGGGGGCTATCTGGAGGAGGCATCTAACTTAGTCACTTATGTTGGAGAGTGTCATGATATCTACCCTCTATTGCCCCTTTATAACGCCGTGCCGAGAG CCTGCTCTAAAATGAATAGTGTGGCGCATGCTAATCTCTGCTTGGATCTGATGGAGGATAGAAAAGTGGGGAAGAACGAGACTACGCACTTGGAGCTTCT GAAGCTTGCAGTATGGCAGGAAAATATTCATGCAGTCCACGAGATCTGGAAGAGTTACGTAAGGCATTATGCCCCTAGTTTCGTGGCTTTGCATACTTGC AGAGAAATCGGATTTCCCAGATATCAAGATGCATCTAAAATGAAACTGCTGAAGTGCTCTTTCAATGAGCTTATTTGTGCATGTGCCAAGACTCAAAATT GTAGCTTGGCTAAGCAGTTAATGTTGCAGATGCAAAAGATAGGGATAGAGCCCTCAAGTTACACATATAATGGCTTGGTCAAAGCACTTGTTCTTGGAGG AGAGTTGACTGAAGGCATCGATATGTTAAAACTAATGCATCGGAGGAATTTGAAGCCGTGTGACTCAACAATAGCGATTGTTTCAGTTGGCTGCAGCAAA AGCTTAGAACTTGATCTGGCAGAGGCTCTGCTGAATGAACTTTCTGATTATCCGCATCCATATCCTTGTAATGACTTTCTCGCAGCATGTGACAGATTGG ATCAACCTGAGCGTGCCTTACAGATGCTGGCCAAAATGAAGAAGTTAAACTTCAAGGCGGATATCCGGACATATGAACTGCTCTTTTCCTTGTTTGGCAA GGTGAATATTCTGTACGAAGAGAGGGATATGTGGTCATATATCGAAGTTACTATAAGAATAAATGCCATAGAGATGGACATGGCTAAAAACGGTATTCAG CATACTCAGACTTCAATGAACAACCTGCTGAGAGCACTCGGGACAGAAGGGATGACCGACGATTTAGTTCAATATCTACGTTTCGCTGAAGACCTTTTCG CTCGTAACAATACTTATTTGGAAACCCCAGTCTACAATACTGTACTACACGCATTGGTCCAAGCTCAAGAAAGTCGTATGGCGTTGAGAATATTCAAGAA TATGAGATCCAGTGTCTTACAAGTTCGCTTTGTCATTGCTTGGCGTGATGTTGCGCGTTGGGTTTCTCCCGTGGCTACCACTTACACTTTGCTCATGAAG ATTGTAATGGATGATGACGATTTTGACGAAGCATTGGTTCTCTTGGATCAAATGGAGCTCGAAGGAGTTCTAGTTGATGTAATATTGTACAACACAATTC TGGATAAAGCATTCGCTAAGGGGCGGATTGACGTTACGGAGTTTATCATCGAGCATATGCGACAGAACGAAGTTCAACCGGATCCATCTACCTGCGCCTC TGTGTTCTCCACATATATGCTGGACTCGAAGACTCTTCAGGCGAGGCTTGAGGATGACACGATCCTTTCCGAATTAGCCGAAGAAGCCGAGTCGGAAATA GTCAAACTCGTCGTGGCTCCTGACGAATACGTTGCCGTTGCGCTCTTGAATCTAAGATGGTGCGCCATGCTCGGGTCCACAATTTATTGGTCTCCAAGCC AAACCTTGTGGGCTAGAAGGCTGGTGGCTAACTACATTGCTCGAAGAACGCTTGTTTGA
AA sequence Show only first row Show all	>Lus10001597 pacid=23169273 polypeptide=Lus10001597 locus=Lus10001597.g ID=Lus10001597.BGIv1.0 annot-version=v1.0 MCSVPDAGYGLLSEGLKCTESVQQQIVDSLISGKREITSNLLDDLVNGSVSLGADDFSDIFRYCARSPDPLFAMEIWKVMEKNNVNPNNYSYLCMVKALW RGGYLEEASNLVTYVGECHDIYPLLPLYNAVPRACSKMNSVAHANLCLDLMEDRKVGKNETTHLELLKLAVWQENIHAVHEIWKSYVRHYAPSFVALHTC REIGFPRYQDASKMKLLKCSFNELICACAKTQNCSLAKQLMLQMQKIGIEPSSYTYNGLVKALVLGGELTEGIDMLKLMHRRNLKPCDSTIAIVSVGCSK SLELDLAEALLNELSDYPHPYPCNDFLAACDRLDQPERALQMLAKMKKLNFKADIRTYELLFSLFGKVNILYEERDMWSYIEVTIRINAIEMDMAKNGIQ HTQTSMNNLLRALGTEGMTDDLVQYLRFAEDLFARNNTYLETPVYNTVLHALVQAQESRMALRIFKNMRSSVLQVRFVIAWRDVARWVSPVATTYTLLMK IVMDDDDFDEALVLLDQMELEGVLVDVILYNTILDKAFAKGRIDVTEFIIEHMRQNEVQPDPSTCASVFSTYMLDSKTLQARLEDDTILSELAEEAESEI VKLVVAPDEYVAVALLNLRWCAMLGSTIYWSPSQTLWARRLVANYIARRTLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	0	1
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	2.2	0.7407
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	2.4	0.7031
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	3.2	0.7187
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	3.5	0.6924
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	4.2	0.6635
AT1G77310			unknown protein		Lus10028666 [exp]	4.6	0.6615
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	4.9	0.6610
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000207 [exp]	5.8	0.6192
AT2G20410			RNA-binding ASCH domain protei...		Lus10028672 [exp]	6.2	0.6388
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10021630 [exp]	11.3	0.6194

Compare expression of checked genes

Lus10001597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.