Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14860 248 / 7e-85 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 243 / 1e-82 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G18300 190 / 1e-61 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 189 / 2e-61 ATNUDT21 nudix hydrolase homolog 21 (.1) AT3G26690 132 / 9e-39 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 132 / 1e-38 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G12600 120 / 2e-34 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034598 [exp] 299 / 1e-104 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 298 / 2e-104 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 279 / 1e-96 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 141 / 3e-42 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 138 / 2e-41 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 108 / 7e-30 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107300 [exp] 258 / 7e-89 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 252 / 2e-86 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.017G131000 [exp] 211 / 8e-70 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 201 / 2e-66 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.012G044300 [exp] 193 / 5e-63 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.015G035000 [exp] 195 / 9e-63 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.001G029500 [exp] 137 / 2e-41 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.003G194900 [exp] 136 / 7e-41 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 124 / 2e-36 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 125 / 6e-36 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10001598 pacid=23169277 polypeptide=Lus10001598 locus=Lus10001598.g ID=Lus10001598.BGIv1.0 annot-version=v1.0 ATGGTTTGTTTGGTGGCTAGAACTGGGAGGGAGCTTCAGAGGTACAATCCAATGGGCGGCCGTCAAGTCGTCGGATGCATTCCTTATAGATATAAAAAGG ATGAAGATGGATCGGTTTCTGATGAATTGGAAGTTCTTGTCATCACATCTCAAAAGGGTGGCTCTGGATTGATGTTCCCTAAGGGTGGTTGGGAGCTTGA TGAATCTGAGCAAGAAGCAGCATCAAGAGAGTCCTTTGAAGAGGCTGGAGTTCTTGGAACTGTTGAAGATCAATTGGGGAAATGGAACTTCATGAGCAAG AGCAATGGCATATTCTATGAAGGGTATATGTTCCCTTTGCTAGTCACCGAGCAGCTCGATTTCTGGCCTGAGCGACATGTCCGAAAACGGATTTGGTTGA GTGTCGATGAGGCGAGAGACACTTGCAGGCACTGGTGGATGAAGGAAGCACTGGACGTGTTGGTATCGCGACTAAGCTTGTTAGAACCGGAACACAAGGA AGAGGACGACGTGGAAGTAGAACAAGAACAGGAAGAAGAACAAGAAGAAGAACACGAAGTAGTAACTTGCAGGCAAAGTTAG
AA sequence Show only first row Show all	>Lus10001598 pacid=23169277 polypeptide=Lus10001598 locus=Lus10001598.g ID=Lus10001598.BGIv1.0 annot-version=v1.0 MVCLVARTGRELQRYNPMGGRQVVGCIPYRYKKDEDGSVSDELEVLVITSQKGGSGLMFPKGGWELDESEQEAASRESFEEAGVLGTVEDQLGKWNFMSK SNGIFYEGYMFPLLVTEQLDFWPERHVRKRIWLSVDEARDTCRHWWMKEALDVLVSRLSLLEPEHKEEDDVEVEQEQEEEQEEEHEVVTCRQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10001598 [exp]	0	1
AT1G76150		ECH2, ATECH2	enoyl-CoA hydratase 2 (.1)		Lus10005648 [exp]	2.0	0.9586
AT4G19160			unknown protein		Lus10038244 [exp]	5.3	0.9491
AT5G59210			myosin heavy chain-related (.1...		Lus10016491 [exp]	11.2	0.9415
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	12.8	0.9475
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	14.2	0.9463
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	14.7	0.9485
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	16.0	0.9403
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	18.5	0.9392
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	19.8	0.9478
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	20.1	0.9459

Compare expression of checked genes

Lus10001598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.