Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32810 687 / 0 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT1G30100 93 / 6e-20 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G24220 87 / 5e-18 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT3G63520 79 / 1e-15 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 73 / 1e-13 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G78390 70 / 1e-12 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 69 / 3e-12 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G18350 62 / 5e-10 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038721 [exp] 932 / 0 AT4G32810 689 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10029513 [exp] 85 / 4e-17 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 77 / 8e-15 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10026185 [exp] 77 / 1e-14 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10023673 [exp] 76 / 1e-14 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10019710 [exp] 76 / 3e-14 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 75 / 4e-14 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10037286 [exp] 57 / 2e-09 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10011750 [exp] 58 / 1e-08 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238500 [exp] 860 / 0 AT4G32810 761 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Potri.018G044100 [exp] 852 / 0 AT4G32810 761 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Potri.018G043000 [exp] 91 / 2e-19 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 91 / 3e-19 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 90 / 6e-19 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 82 / 1e-16 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 81 / 5e-16 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.003G176300 [exp] 78 / 4e-15 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.001G393800 [exp] 78 / 4e-15 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.009G152200 [exp] 71 / 5e-13 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10001599 pacid=23158697 polypeptide=Lus10001599 locus=Lus10001599.g ID=Lus10001599.BGIv1.0 annot-version=v1.0 ATGGTGTTGTTCCAAAGTGGGACTTACCTTAGGAACGGACCAGGTCTATGGCACCTAGGCGATTACAACTTCCGCCACCTTTTCGACGGCTACGCGACAC TCGCTAAGCTCCATTTCAAAGACGGCCGGCTGGTGTTCGGTCACCGCCAAATCGAGTCCGATGCATACAAGGCCGCCAAGAAGAACAACAAGCTCTGCTA CCGTGAGTTCTCCGAGGCTCCTAAGCCGGACAACTTCTTGTCCTACATCGGCGACATGGCCAGCCTCCTCTCCGGTGCATCCCTCACCGATAACGCAAAC ACTGGTGTTGTCAAGCTAGGAGATGGCCGCGTGGTATGCCTAACGGAGACTCAAAAAGGGTCCATAGTGGTGGACCCCAGAAACCTAGATACGATAGAAA AGTTTGAGTACACGGACTCGCTAGGTGGGCTGATCCACTCAGCGCACCCGATCGTGACCGACTCTGAGTTCCTGACGCTGCTGCCCGATTTGATCCGACC GGGTTACTTGGTAGTGAGGATGGAAGCAGGGAGTAACGAACGGAAGGTGATTGGGCGCGTGGATTGTAGGGGTGGTCCTTCTCCTGGGTGGGTCCACTCA TTCCCGGTAACGGAGCATTACGTGGTGGTCCCGGAAATGCCATTGAGGTACTGCGCTCAGAATTTGCTAAAGGCTGAACCGACGCCGCTTTACAAGTTTG AATGGCATCCTGAGTCCAAGGTCTTTATGCACATCATGTGCAAGGCTAGTGGCAAAATCGTGGCGAGCGTGGAGGTGCCGTTATTTGTGACATTCCACTT CATAAATGCGTACGAGGAGAAGGATGAGGATGGGAGGGTGACTGCTGTGATCGCAGATTGTTGTGAGCATAGCGCGGACACTACCATACTGGAAAATCTT AGACTTCAAAATCTACGTTCTTTCATGGGAGTTGATACATTGCCGGATGCTAAGGTTGGGAGGTTTAGGATTCCACTGGATGGGAGTCCAAAAGGGGAAT TGGAGGCAGCATTGGACCCAGAAGAGCATGGGAGAGGGATGGATATGTGCAGCATTAACCCAGCATTTTTGGGCAACAAGTACCGTTATGCTTATGCATG TGGAGCCCAGCGTCCATGCAATTTCCCCAACACCCTCACGAAGATTGATCTGATGGAGAAGAAAGCCAAGAATTGGAGTGATGAGGGTACAATTCCGTCG GAGCCATTTTTCGTGGCTAGACCCGGTGCAACAGAGGAAGATGATGGAGTGGTGATATCGATGGTAAGCGAGAAGGAAGGAGGAGGGTATGCGGTGGTGT TGGATGGAAAAACATTTGAAGAGATTGCAAGAGCGAGATTCCCATACGGCCTTCCTTACGGCCTTCATGGATGCTGGGTCCCTACTGTCTAA
AA sequence Show only first row Show all	>Lus10001599 pacid=23158697 polypeptide=Lus10001599 locus=Lus10001599.g ID=Lus10001599.BGIv1.0 annot-version=v1.0 MVLFQSGTYLRNGPGLWHLGDYNFRHLFDGYATLAKLHFKDGRLVFGHRQIESDAYKAAKKNNKLCYREFSEAPKPDNFLSYIGDMASLLSGASLTDNAN TGVVKLGDGRVVCLTETQKGSIVVDPRNLDTIEKFEYTDSLGGLIHSAHPIVTDSEFLTLLPDLIRPGYLVVRMEAGSNERKVIGRVDCRGGPSPGWVHS FPVTEHYVVVPEMPLRYCAQNLLKAEPTPLYKFEWHPESKVFMHIMCKASGKIVASVEVPLFVTFHFINAYEEKDEDGRVTAVIADCCEHSADTTILENL RLQNLRSFMGVDTLPDAKVGRFRIPLDGSPKGELEAALDPEEHGRGMDMCSINPAFLGNKYRYAYACGAQRPCNFPNTLTKIDLMEKKAKNWSDEGTIPS EPFFVARPGATEEDDGVVISMVSEKEGGGYAVVLDGKTFEEIARARFPYGLPYGLHGCWVPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10001599 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	3.6	0.9653
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	6.0	0.9539
AT5G04010			F-box family protein (.1)		Lus10035421 [exp]	6.3	0.9577
					Lus10006423 [exp]	6.9	0.9604
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	8.0	0.9581
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	10.2	0.9589
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10021955 [exp]	13.6	0.9475
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	15.0	0.9535
AT5G28950			unknown protein		Lus10025132 [exp]	16.4	0.9472
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10021267 [exp]	16.6	0.9443

Compare expression of checked genes

Lus10001599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.