Plant FIBer expression Database

Lus10001603 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11600 101 / 2e-26 unknown protein
AT1G19990 75 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002800
[exp]
199 / 3e-65 AT5G11600 155 / 3e-47 unknown protein
Lus10033141
[exp]
81 / 1e-18 AT1G19990 132 / 2e-37 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G238800
[exp]
130 / 4e-38 AT5G11600 137 / 2e-40 unknown protein
Potri.018G043800
[exp]
124 / 1e-35 AT5G11600 110 / 6e-30 unknown protein
Potri.005G239600
[exp]
77 / 6e-17 AT1G19990 92 / 6e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10001603 pacid=23158694 polypeptide=Lus10001603 locus=Lus10001603.g ID=Lus10001603.BGIv1.0 annot-version=v1.0
ATGGCCCCAGAGACGAAGCAAAACTTGTCCAAATTGAAGCCCGGGAGCAGCAGCAATCAAGATGGTTCTAACCGCAAGAGGATTGAGAGCTCTAGTAAGC
AACCTGCTGATTCAAGGAATAAATCTGTCTCAACTGTCACTAGAACAGAGGTTAAAGCAACAACAACGAGTACATCGAAGGCTACCACGAGTACGACAAC
CAAAACTACTAGAGTGAGGGAGAAGAAAGTATTCTCCTTGACTGGCCAGAGATATGATCCCCCTGAAGAGAGAGAGCCTCTTAGGATTTTCTACGAGTCA
TTGTCTAAACAGATACCAACTAGCGAGATGGCAGAGTTTTGGATGATGGAACATGGGTTGTTGTCCCCGGAGAGATCTAAGAAGGCATTCGAGAAGAAGC
AGAGAAAGCAAAAGATGCAGCGTATGGGCACTCCCATCAAATCTCCCAAAACACCAAGTAAACCCGAGAGTTCTCAGAGGCAACAAGCAACATCAAAGAA
TGGTGATTTGAAATCCAAGAAAAGAATAGTCAATGACAGTGACGATGATGATAACCTTGTTTTAAGTGCTAAAAGGAGGAAACGGTAA
AA sequence
>Lus10001603 pacid=23158694 polypeptide=Lus10001603 locus=Lus10001603.g ID=Lus10001603.BGIv1.0 annot-version=v1.0
MAPETKQNLSKLKPGSSSNQDGSNRKRIESSSKQPADSRNKSVSTVTRTEVKATTTSTSKATTSTTTKTTRVREKKVFSLTGQRYDPPEEREPLRIFYES
LSKQIPTSEMAEFWMMEHGLLSPERSKKAFEKKQRKQKMQRMGTPIKSPKTPSKPESSQRQQATSKNGDLKSKKRIVNDSDDDDNLVLSAKRRKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11600 unknown protein Lus10001603
[exp]
0 1
AT5G55290 ATPase, V0 complex, subunit E ... Lus10032570
[exp]
4.4 0.8216
AT2G45200 ATGOS12, GOS12 golgi snare 12 (.1.2) Lus10030294
[exp]
8.9 0.8085
AT4G19070 Putative membrane lipoprotein ... Lus10015450
[exp]
8.9 0.8107
AT5G14240 Thioredoxin superfamily protei... Lus10032064
[exp]
9.5 0.8053
AT5G38900 Thioredoxin superfamily protei... Lus10034369
[exp]
9.6 0.8139
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10025201
[exp]
10.4 0.8110
AT2G20495 unknown protein Lus10022916
[exp]
11.0 0.7792
AT1G51740 ATSYP81, SYP81,... ORTHOLOG OF YEAST UFE1 \(UNKNO... Lus10040237
[exp]
13.5 0.8085
AT3G27100 unknown protein Lus10012534
[exp]
13.8 0.8019
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Lus10030786
[exp]
14.4 0.7941

Lus10001603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.