Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 1212 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 940 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G40030 361 / 2e-115 Protein kinase superfamily protein (.1) AT5G47750 362 / 1e-114 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 355 / 4e-113 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 353 / 1e-112 D6PK D6 protein kinase (.1) AT3G12690 355 / 3e-112 AGC1.5 AGC kinase 1.5 (.1.2.3) AT2G44830 360 / 8e-112 Protein kinase superfamily protein (.1) AT1G79250 348 / 1e-109 AGC1.7 AGC kinase 1.7 (.1.2) AT1G16440 345 / 2e-109 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001355 [exp] 1508 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10026572 [exp] 1419 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036144 [exp] 917 / 0 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10018122 [exp] 889 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10013856 [exp] 403 / 4e-131 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10038753 [exp] 359 / 2e-113 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 359 / 3e-113 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 358 / 5e-113 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 353 / 3e-112 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 1343 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 998 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 835 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170550 [exp] 409 / 1e-137 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.016G004900 [exp] 360 / 1e-113 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 358 / 5e-113 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 359 / 3e-112 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.010G175900 [exp] 353 / 3e-111 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.014G047500 [exp] 356 / 9e-111 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 352 / 1e-110 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001604 pacid=23175424 polypeptide=Lus10001604 locus=Lus10001604.g ID=Lus10001604.BGIv1.0 annot-version=v1.0 ATGAGTGGTAGCAGCAGTAGCATTAGTAATAGTATAGCGGAGAGGACGGCGGAATGGGGGCTGGTAGTGAGGCCGCCGGACGGGGGAGGAGAAGGGAGCT TCAAAGCGGCGACGACGCGGTGGTCAGGGGGGTCGGAGAAGGCGGCGGGTGGGGCGGCGTCATCAACGAGGACGTCGGAGGAGGAAGTTATCCCGAGAGT GTCGCAGGAGCTTAAAGATGCTCTGTCTTCACTCCAGCAAACATTTGTGGTGTCGGATGCTACAAAGCCTGACTGTCCCATTTTGTATGCCAGCAGCGGC TTCTTCACCATGACTGGCTACTCTTCCAAGGAAGTCATCGGCCGTAACTGGCAAGTCTTTTCCATCTCCCTTGATTCTCATCTTCTTCACAACCGGTTCC TGCAAGGAGTGGACACAGACGAGAAAGAAGTAGCGAAGATCAGGAACGCAGTGAAGAGTGGGAAAAGCTACAGCGGAAGGCTTCTAAACTACAAGAAGGA TGGAACTCCTTTCTGGAATCTCCTCACTGTCACCCCTATCAAAGATGACCTCGGCAACACCATCAAGTTCATTGGGATGCAGGTGGAGGTCAGCAAATAC ACTGAAGGTGTCGTCGACAAGGCCTTGCGTCCCAACGGCTTACCACAATCCCTCATCCGTTACGATGCTCGTCAGAAGGAGCAGGCCCTTGATTCCATCA CTGAAGTTGTGCAAACAGTCAAGCATCCAAAGTCTCATGTTCGGGCAGCCAGTCATGACGCTGCTGAAAATGTTGATTACGTCTTGCCGAAATCCACTGA ACGTATCTCCATTGCCACTCCGACGCCTAATAGAGAAACTCCTCGTTCTGGATCTACACCTGACGCTTTTGGCATGGCTAGTCCTCAGGGTTACACTAAC AAACCCAGGAATTCTCTCCGGCTCTCCTTAAAGGGATTTAAAGGTCCTTCTATCAGTTCTTTGAGGAAGCTAGAAGAACTGCCAAGTATTGAACCTGAGG TCTTGATGACCAAGGATGTGAGCCGCACTGATAGTTGGGAACATGCTGAAAGAGAGGCAGACATGCGCCAGGGGTTTGATTTGGCAACCACATTGGAACG GATTGAGAAGAATTTCGTGATCTCTGATCCTAGGCTTCCTGATTGCCCTATTCTAGCAAATACTGAACGGTTTCTTCAAGGACCTGAAACGGATCAAGCA ACTGTGTCGAAGATAAGAGATGCAGTAAGAGAACAGAGGGAAATCACTGTTCAGCTGATCAACTACACTAAAAGTGGAAAGAAATTCTGGAATTTGTTTC ACTTGCAACCAATGCGGGACCAAAAGGGGGAACTGCAATATTTCATTGGCGTTCAGCTAGATGGAAGTGATCATGTTGAACCCTTAAGAAATCGTCTTTC AGAGAAATCCGAGCAGCAGAGTGCTAAGTTGGTCAAAGCTACTGCATTAAACGTGGATGAAGCTGTTCGGGAACTTCCAGATGCCAACTTGAGACCCGAA GATTTGTGGGAAATTCATTCACAACCTGTATTTCCACGACCTCACAAAAGGGATAGTTCTTTATGGAAAGCAATACAGAAGATAACCTCTCGTGGTGAGA AGATTGGACTGCACCATTTCAAACCCATTAAACCCTTGGGCTGTGGTGATACGGGAAGTGTTCACTTAGTAGAACTGGAAGAAACAGGCCAACTCTATGC TATGAAGGCAATGGAAAAATCCATGATGATGAACCGTAACAAGGTTCACCGAGCATGCATTGAGAGAGAAATCATTTCACTTCTAGATCATCCTTTCCTT CCAACGCTATATACTTCCTTTGAGACTCCAACACATGTATGTCTAATAACAGACTTTTGTTCTGGTGGAGAGCTATTTGCACTACTTGACAAGCAGCCTA TGAAATTCTTTAAGGAGGAATCTGCAAGGTTCTATGCAGCAGAGGTTGTCATTGGCTTGGAGTACCTTCACTGTCTAGGAATTGTTTACCGAGATTTGAA GCCCGAAAACATCTTAGTCCAGGAGGACGGCCATGTTGTTTTAACCGACTTCGACCTTTCTTTTGTGGCATCATGCAAACCTCAGGTCATAAAACATCCT CCACCAAACAACAGAAGAAGATCTAAGAGCCAACCACCTCCTATGTTTATTGCAGAACCAGTTACTAATTCAAATTCATTCGTCGGAACTGAAGAATACA TTGCTCCTGAAATTATCATGGGGACTGGCCATAGTAGTGCTATTGATTGGTGGGCGCTTGGTATTTTGGTGTATGAGATGCTATACGGGCGTACACCTTT CAGGGGCAAGAACCGGCAGAAGACATTTGCCAACATTTTGCACAAAGATCTTACATTCCCTAGTAGCATCCCTGTGAGCCTTGAAGCACGTCAGTTAATC TATGGCTTGTTGAACCGGGAACCTGAAAGCCGGTTAGGGTCGAATACCGGTTCCAACGAGATCAAACAGCATCCCTTCTTCCGTGGAATCAACTGGCCAC TTATACGCTGCATGAGCCCACCTGCGTTGGAAGTGCCACTGCAATTGATTGGTAAAGAGGCGACGGCAAATGTTATTTCCTGGGAAGATGATGGCGTCCT AACCCAATCTATGGACTTGGATCTTTTTTGA
AA sequence Show only first row Show all	>Lus10001604 pacid=23175424 polypeptide=Lus10001604 locus=Lus10001604.g ID=Lus10001604.BGIv1.0 annot-version=v1.0 MSGSSSSISNSIAERTAEWGLVVRPPDGGGEGSFKAATTRWSGGSEKAAGGAASSTRTSEEEVIPRVSQELKDALSSLQQTFVVSDATKPDCPILYASSG FFTMTGYSSKEVIGRNWQVFSISLDSHLLHNRFLQGVDTDEKEVAKIRNAVKSGKSYSGRLLNYKKDGTPFWNLLTVTPIKDDLGNTIKFIGMQVEVSKY TEGVVDKALRPNGLPQSLIRYDARQKEQALDSITEVVQTVKHPKSHVRAASHDAAENVDYVLPKSTERISIATPTPNRETPRSGSTPDAFGMASPQGYTN KPRNSLRLSLKGFKGPSISSLRKLEELPSIEPEVLMTKDVSRTDSWEHAEREADMRQGFDLATTLERIEKNFVISDPRLPDCPILANTERFLQGPETDQA TVSKIRDAVREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSEKSEQQSAKLVKATALNVDEAVRELPDANLRPE DLWEIHSQPVFPRPHKRDSSLWKAIQKITSRGEKIGLHHFKPIKPLGCGDTGSVHLVELEETGQLYAMKAMEKSMMMNRNKVHRACIEREIISLLDHPFL PTLYTSFETPTHVCLITDFCSGGELFALLDKQPMKFFKEESARFYAAEVVIGLEYLHCLGIVYRDLKPENILVQEDGHVVLTDFDLSFVASCKPQVIKHP PPNNRRRSKSQPPPMFIAEPVTNSNSFVGTEEYIAPEIIMGTGHSSAIDWWALGILVYEMLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLEARQLI YGLLNREPESRLGSNTGSNEIKQHPFFRGINWPLIRCMSPPALEVPLQLIGKEATANVISWEDDGVLTQSMDLDLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001604 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	1.0	0.9748
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	6.5	0.9118
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	9.4	0.9249
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	11.4	0.9157
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	13.0	0.9067
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	15.1	0.9157
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	17.7	0.8903
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	18.3	0.9139
AT1G62780			unknown protein		Lus10024592 [exp]	19.8	0.9058
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	21.6	0.8957

Compare expression of checked genes

Lus10001604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.