Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38130 834 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 600 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 532 / 0 HDA09, HDA9 histone deacetylase 9 (.1) AT5G35600 460 / 1e-155 HDA7 histone deacetylase7 (.1) AT2G17390 405 / 1e-135 AKR2B ankyrin repeat-containing 2B (.1) AT4G35450 400 / 3e-134 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT3G44490 150 / 6e-42 HDA17 histone deacetylase 17 (.1) AT3G44660 120 / 2e-31 HDA10 histone deacetylase 10 (.1) AT5G61060 123 / 7e-29 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT1G08460 119 / 9e-29 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001356 [exp] 950 / 0 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 604 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10020570 [exp] 546 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10013859 [exp] 540 / 0 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10006274 [exp] 533 / 0 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10043337 [exp] 522 / 7e-180 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10026575 [exp] 516 / 2e-178 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10034689 [exp] 121 / 3e-28 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 109 / 2e-24 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209800 [exp] 870 / 0 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 859 / 0 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 619 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 607 / 0 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 534 / 0 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G210100 [exp] 522 / 1e-180 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 521 / 2e-180 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G092900 [exp] 114 / 6e-26 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 98 / 7e-21 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 96 / 9e-21 AT1G08460 552 / 0.0 histone deacetylase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10001605 pacid=23175433 polypeptide=Lus10001605 locus=Lus10001605.g ID=Lus10001605.BGIv1.0 annot-version=v1.0 ATGGATACCGGGGGAAACTCTCTCCCATCTGGGTCTGACGCGGTGAAGAGAAAGGTTTGCTATTTCTACGACCCAGAAGTAGGGAATTACTACTATGGTC AGGGTCATCCCATGAAGCCTCATCGAATTCGGATGACCCATGCTCTTCTCGCACACTATGGCCTGCTTCAGCATATGCAGGTCCTCAAACCCTTCCCTGC TCGTGACAGGGATCTGTGTCGCTTCCACGCGGATGACTACGTCTCTTTCCTCCGTAGCATTACCCCTGAGACCCAACAGGATCAGCTCCGCCAACTCAAG CGATTCAATGTTGGAGAAGATTGTCCTGTCTTCGACGGTCTCTATTCCTTTTGCCAGACCTACGCTGGTGGCTCTGTTGGTGGAGCTGTTAAGTTGAACC ATGACCTTTGTGACATTGCCGTCAATTGGGCTGGTGGCCTTCACCATGCCAAGAAGTGTGAGGCTTCTGGCTTTTGCTATGTCAATGACATTGTCCTTGC TATCTTGGAACTTCTTAAAAAACACGAGCGGGTTCTGTATGTGGACATTGACATTCACCATGGTGATGGTGTTGAGGAGGCTTTTTACACCACTGATAGG GTCATGACTGTTTCTTTTCACAAGTTTGGAGATTATTTTCCTGGTACCGGAGATATACGTGATATTGGATATTCAAAAGGGAAATACTACTCTCTTAATG TTCCATTAGATGATGGGATTGATGATGAGAGCTATCATTATTTGTTTAAGCCAATAATTGGCAAAGTAATGGAAGTTTTCAAGCCTGGTGCTGTGGTTCT CCAGTGTGGTGCTGACTCGTTATCTGGAGACCGATTAGGGTGCTTTAATCTATCAATCAAGGGCCATGCGGAGTGTGTTAAGTACATGAGATCTTTCAAT GTGCCACTATTGCTACTAGGCGGAGGCGGATATACAATTAGGAATGTTGCACGGTGCTGGTGCTATGAGACAGGGGTGGCACTTGGAATCGAGGTTGAGG ACAAAATGCCACAGCATGAATATTATGAGTACTTTGGTCCAGACTACACTCTTCATGTTGCTCCCAGTAACATGGAAAACAAAAATACTCGACAGTTACT TGAGGATATAAAATGTAGACTTCTTGATTATCTCTCTAAGCTTCAGCATGCACCCAGTGTACAGTTCCAGGAGCGACCTCCTGATACTGAGACTCCAGAA GTAGATGAAGATCAAGAAGATGGTGATCAGAGAATGGATCAGGATTTTGACATGGATGTTGAAGAAGAACGCAAGCTCATGTCAGGCAGGGTGAAGAGAG AAGCAGTCGATGCTGGGCCAAAGGAGCCGGAAGGCCAGAAAGGAGTTACTGAGCATGCTAGAGGTCCAGATGCAATTGTCGATGAAACTGCAAGTGCAAA GCTGTTCGTCATGGCTTCCAACAACGATGTTCCTCCATCTGCATCCGATTCCACGCAAGGAAGAGCTACTGCTTTGCCAGGAACAGCTTCTGCACCAAAT CCTTTCGATTTCTCAGCTATGTCTGGCCTGCTTAATGATCCAAGCATTAAAGAACTAGCTGACCAGATAGCAAAAGATCCCTCATTTAATCAGATGGCAG AACAGCTGCAGAAAACATTCCAAGGTGCATCCGTTCATGATGGTATGCCACAGTTTGATACACAGCAATATTATTCCACCATGCAGCAGGTTATGCAGAA TCCTCAATTTATGGCCATGGCTGAACGCCTTGGAAGTGCTCTAATGCAGGACCCATCCATGTCCCAAATGCTTGAACAAATGACAAATCCAGTGCAAAAA GATCAAATGGAGGAAAAAATGGCACGTATAAAAGACGATCCTTCTTTGAAGCCTATTTTGGACGAGATAGAGAGTGGAGGTCCTGCTGCTATGATGAGAT ATATGAATGACAAAGATGTTCTCAAAAAGTTGAGTGAAGCCATGGGTCTTGCAATTCCTGGGGAAGTCACCTCAGCTGAGGATTCTGGCTTAGAGGAAGC AGCTGAAGGTGGAAACGATGACGAATCTATTGTTCATCACTGCGCTAGTGTTGGTGATGTCGAGGGTCTAAAAAGTGCACTAGCTTCTGGTGCTGACAAA GATGAAGAGGATGCTGAAGGAAGAACTGCTTTGCATTTTGCCTGTGGATATGGAGAGGCCGAGTGTGCTAAAATCCTCCTTGAAGCAGGAGCATTGGTCG ACGCGGTGGATAAGAATAAGAACACAGCGCTGCATTATGCTGCTGGATACGGGAGAAAAGAGTGTGTATCCGTACTACTAGACAATGGCGCTGCAGTAAC TCTACAGAATATGGATGGAAAGACTCCCATTGATGTCGCAAAGCTGAACAGCCAGGCCGATGTTCTTAAGTTGCTTGAGAAGGATGCCTTCCTGTAA
AA sequence Show only first row Show all	>Lus10001605 pacid=23175433 polypeptide=Lus10001605 locus=Lus10001605.g ID=Lus10001605.BGIv1.0 annot-version=v1.0 MDTGGNSLPSGSDAVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQLRQLK RFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKKHERVLYVDIDIHHGDGVEEAFYTTDR VMTVSFHKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFN VPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPQHEYYEYFGPDYTLHVAPSNMENKNTRQLLEDIKCRLLDYLSKLQHAPSVQFQERPPDTETPE VDEDQEDGDQRMDQDFDMDVEEERKLMSGRVKREAVDAGPKEPEGQKGVTEHARGPDAIVDETASAKLFVMASNNDVPPSASDSTQGRATALPGTASAPN PFDFSAMSGLLNDPSIKELADQIAKDPSFNQMAEQLQKTFQGASVHDGMPQFDTQQYYSTMQQVMQNPQFMAMAERLGSALMQDPSMSQMLEQMTNPVQK DQMEEKMARIKDDPSLKPILDEIESGGPAAMMRYMNDKDVLKKLSEAMGLAIPGEVTSAEDSGLEEAAEGGNDDESIVHHCASVGDVEGLKSALASGADK DEEDAEGRTALHFACGYGEAECAKILLEAGALVDAVDKNKNTALHYAAGYGRKECVSVLLDNGAAVTLQNMDGKTPIDVAKLNSQADVLKLLEKDAFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001605 [exp]	0	1
AT5G26910			unknown protein		Lus10020689 [exp]	9.5	0.8321
AT4G17240			unknown protein		Lus10038797 [exp]	10.8	0.8690
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	12.3	0.7983
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	12.4	0.8656
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	16.2	0.8610
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	20.6	0.8663
AT4G39860			unknown protein		Lus10041695 [exp]	25.5	0.8198
AT5G43250	CCAAT	NF-YC13	"nuclear factor Y, subunit C13...		Lus10030832 [exp]	28.3	0.8426
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	31.0	0.7873
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	33.8	0.7889

Compare expression of checked genes

Lus10001605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.