Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10330 65 / 6e-14 glycine-rich protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001357 [exp] 142 / 4e-44 AT4G10330 152 / 3e-48 glycine-rich protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063300 [exp] 87 / 1e-22 AT4G10330 65 / 4e-14 glycine-rich protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001606 pacid=23175426 polypeptide=Lus10001606 locus=Lus10001606.g ID=Lus10001606.BGIv1.0 annot-version=v1.0 ATGAGCCGATTCACTGGTGCCAGCAGCAGCAGCAGCAGCAGCGGTAACGACGATGAAGGGAAAGGATTGATATGGAAGCTTCCAGAAGTTAGGGTAAAGG ATTTTGGTAAGGTAGGCCCAGCTTTCGGATTCGGTGCCGGATGCGGAGTCGGGTTCGGCGTCGGACTGATTGGAGGCTTCGGGATCGGTCCTGGAATTCC TGGCCTCCAGTTCGGTATGGGATTGGGTGCTGGTTGCGGTGTTGGCTATGGATTTGGTTATGGCGCCGGGAAGGGCGTAGCTCATGATCACAGTCGCAGA TACTCAAACGTCGGCAAACATTTCTACGGTCCTTCCGCCCTCCCTCCCCGGAATGAAATTGGCGCTCTGTTGAATGAATTGGTTGCGAATGCGGAGAAGT TAGCTAAGGCAACGTCACGCGAAATCGACAAATGGAGAAGATGA
AA sequence Show only first row Show all	>Lus10001606 pacid=23175426 polypeptide=Lus10001606 locus=Lus10001606.g ID=Lus10001606.BGIv1.0 annot-version=v1.0 MSRFTGASSSSSSSGNDDEGKGLIWKLPEVRVKDFGKVGPAFGFGAGCGVGFGVGLIGGFGIGPGIPGLQFGMGLGAGCGVGYGFGYGAGKGVAHDHSRR YSNVGKHFYGPSALPPRNEIGALLNELVANAEKLAKATSREIDKWRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	0	1
AT1G44770			unknown protein		Lus10014131 [exp]	1.4	0.9805
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	1.4	0.9700
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	2.4	0.9617
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	2.8	0.9612
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	3.5	0.9658
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	7.3	0.9610
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	9.2	0.9672
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	10.5	0.9603
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	10.9	0.9570
AT5G49710			unknown protein		Lus10000765 [exp]	13.5	0.9597

Compare expression of checked genes

Lus10001606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.