Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 177 / 2e-56 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001359 [exp] 392 / 2e-140 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 287 / 4e-99 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 284 / 6e-98 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 280 / 1e-96 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 273 / 1e-93 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 265 / 1e-90 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 262 / 2e-89 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 251 / 6e-85 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 247 / 2e-83 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299600 [exp] 189 / 1e-60 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 186 / 7e-60 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 183 / 2e-58 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 178 / 1e-56 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 167 / 2e-52 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 54 / 7e-09 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10001608 pacid=23175432 polypeptide=Lus10001608 locus=Lus10001608.g ID=Lus10001608.BGIv1.0 annot-version=v1.0 ATGCATGCAGCCACAACCTTCACGTGGTACGTCTTCAACCAGACCGACAGCCCTTCCTTACGTAAGAACGTGAGCATCATCAGCCTAGTCGTCGAAGACA TGCCCGAAAAGGGAAACTTCTCCTCTCCGGCAGCCCAGACGACAAATATCTCCATCCACTTAAACTCCAACTTCATCGGGAACTACACCGCCAACCTCCG GAGGCAGTTCAACGGGATCATCTACCAGGAGATCGCAGGGATATGGCAGTGGAATGGAGACGGAAAGGCTCCGAAAGGGTTGGTCACCGGGATCGCGCAT TACGTGAGGCTGCAGGCTCGATACGGGACGGTGGAGAAGGTGAAGCCCGGGGAAGGCGAGAGGTGGGACCAAGGGAGAGGTGTGACGGCTAGGTTTCTGG TGTATTGTAGTCAGCTGAAGAGAGGGTTTGTCGGGGAGCTGAATAAGAAGATGAGGCATGGTTATACCGATGGGTACTTTGTTGAGTTGCTGGGGAAGTC CGTGGAGCTTCTTTGGAGTAATTACAAGGAGAGGTACGGCCACCTGGATTCGGGGCTGATCAGTCGTCATGCATGA
AA sequence Show only first row Show all	>Lus10001608 pacid=23175432 polypeptide=Lus10001608 locus=Lus10001608.g ID=Lus10001608.BGIv1.0 annot-version=v1.0 MHAATTFTWYVFNQTDSPSLRKNVSIISLVVEDMPEKGNFSSPAAQTTNISIHLNSNFIGNYTANLRRQFNGIIYQEIAGIWQWNGDGKAPKGLVTGIAH YVRLQARYGTVEKVKPGEGERWDQGRGVTARFLVYCSQLKRGFVGELNKKMRHGYTDGYFVELLGKSVELLWSNYKERYGHLDSGLISRHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	1.0	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	2.0	1.0000
					Lus10024141 [exp]	2.4	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	2.8	1.0000
					Lus10013255 [exp]	3.2	1.0000
					Lus10013259 [exp]	3.5	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	3.7	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	4.0	1.0000
					Lus10028570 [exp]	4.2	1.0000
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10029435 [exp]	4.5	1.0000

Compare expression of checked genes

Lus10001608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.