Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 196 / 6e-63 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 190 / 1e-60 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001360 [exp] 449 / 3e-162 AT2G15220 202 / 3e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 227 / 1e-74 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 224 / 8e-74 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 223 / 6e-73 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 220 / 4e-72 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 220 / 8e-72 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 219 / 1e-71 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 219 / 2e-71 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 218 / 4e-71 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 216 / 1e-70 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 210 / 3e-68 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 207 / 3e-67 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 199 / 5e-64 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 181 / 4e-57 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10001609 pacid=23175421 polypeptide=Lus10001609 locus=Lus10001609.g ID=Lus10001609.BGIv1.0 annot-version=v1.0 ATGGTCCACTCCATCCCACTTCCCTTCCTCCTCCTCTTACCCTTGGCTTCCGCCGTTGCCGTTTCCGCCGCCGGCAAAACCACCGGCATCGGTGTGACAT ACGCAGTAGTCAACCGGGCACCCGGATGCACCGCATTCACGACCCACATCGGCATCCCAGCCGCCAAACAAGCCATGTCATCAGCTTCCAACTTCGTCTT AAACCTCTTCAACGAGACAGCATGTCCCACCGACCGCAAGAACACCGTCAAGAAGATCACCCTCTTCATCGACGACATGAAAGCAGCTGGAGGGCCCCAC TCCCAGCACGTGGCGGACGCGTACTCCGTGGGGAACGAGATCCACGTCAACGCCAACTTCTTGGGGTCCTACAAGGGCAACGTCCGGAGGGAGTTCGTCG GGATTGTGTACCACCACGTGGCGAGCATATGGCAGTGGAACGGCGTCGGAGAGGCACCTAAAGGGTTGGTGAGCGGGATCGCCGAGTTTGCGAGGATGGA TGCGCGTTACGGGACGAGTCAGAAGGTGAGACTCGGGGATGGGAGCCGGTGGGACCAAGGGGATGGTGTGACGTGTAGGTTTTTGGAGTACTGTAACATG ATGAAGAAAGGGTTTGTTAAGGAGCTTAATAGGAGGATGAGGTATGGCTATACGAATGCTTATTTCGTTGACTTGTTGGGGAAGCCCGTTGACCAGGTTT GGAAAGACTACAAGGCTAAGTACCCCAGAAAGCATTATTAG
AA sequence Show only first row Show all	>Lus10001609 pacid=23175421 polypeptide=Lus10001609 locus=Lus10001609.g ID=Lus10001609.BGIv1.0 annot-version=v1.0 MVHSIPLPFLLLLPLASAVAVSAAGKTTGIGVTYAVVNRAPGCTAFTTHIGIPAAKQAMSSASNFVLNLFNETACPTDRKNTVKKITLFIDDMKAAGGPH SQHVADAYSVGNEIHVNANFLGSYKGNVRREFVGIVYHHVASIWQWNGVGEAPKGLVSGIAEFARMDARYGTSQKVRLGDGSRWDQGDGVTCRFLEYCNM MKKGFVKELNRRMRYGYTNAYFVDLLGKPVDQVWKDYKAKYPRKHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10001609 [exp]	0	1
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	9.4	0.6790
					Lus10037463 [exp]	16.7	0.6592
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	17.2	0.6650
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10019340 [exp]	18.4	0.6467
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	19.8	0.6649
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	20.7	0.5799
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	24.3	0.6222
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	26.5	0.6432
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	33.6	0.6000
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	41.4	0.6162

Compare expression of checked genes

Lus10001609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.