Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24690 525 / 0 Protein of unknown function (DUF3411) (.1) AT5G22790 94 / 2e-20 RER1 reticulata-related 1 (.1) AT2G37860 90 / 4e-19 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G56140 84 / 7e-17 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 82 / 3e-16 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G08630 54 / 1e-07 Protein of unknown function (DUF3411) (.1) AT5G12470 50 / 2e-06 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022966 [exp] 796 / 0 AT5G24690 573 / 0.0 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 89 / 3e-18 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 88 / 5e-18 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10024346 [exp] 82 / 4e-17 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10010224 [exp] 84 / 1e-16 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 75 / 4e-14 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10012657 [exp] 70 / 6e-13 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10019744 [exp] 61 / 8e-10 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 61 / 9e-10 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019600 [exp] 570 / 0 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 554 / 0 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 97 / 2e-21 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.008G074300 [exp] 87 / 6e-18 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.009G150400 [exp] 85 / 1e-17 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.009G051800 [exp] 57 / 2e-08 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 57 / 2e-08 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 55 / 5e-08 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10001610 pacid=23175423 polypeptide=Lus10001610 locus=Lus10001610.g ID=Lus10001610.BGIv1.0 annot-version=v1.0 ATGTCTAACTTGGTTCTCAAAATCCCAGCAACCCAACTTCCCACCACCGCCCCCAACCCTTCCGCCGCCTCGAGGTCCTCGCCGTCGATACCGCATCCCC GGTTCATCATCACGAGAAGACGGAGGCGTACGCCGACTCTGCCGATTTCGTGTAGCTGTTCCTCGCCGTCTCCGGCAATTGGCGGAGGGAACGATGTTGC GCAGTTGGAGCGCTGCTTTATGGCTGCGCCCCTGATGAAGAGTTCGGGCCCGGTTATGAAGGGGAATCCCAAGTCCGGTGGTGCTGTCACTTTGGAGAAA GGGAAGGTCGAGAAGATTTCCAAGTCTAAAGCCCCCGAGGTTGAGACTGGTGGAGGTGGTGGAGATATTGGGAAAATTATCAACAATGGCGGTGGAGACG GAGGTGATGATGATGGTGATGATGATGACTACTTTGATGACTTTGATGAAGATGGCGAAGAGGGTGATGAAGGGGGGCTGTTCAGAAGGAGGAGAGTCTT TGAAGAGCTTTTTGATAAAAAGTTCGTAGATGCTGTTTTGAATGAGTGGCAGAAAACCATGATGGATTTGCCTGCTGGTATCAGGCAAGCTTATGAAATG GGTTTGGTTAGCTCAACTCAAATGGTAAAAGTCCTTGCAATCAATGCCAGACCTACCACCACAAGGTTCATTTCAAGAACGCTTCCTCAGTCAATCTCAA GGGCATTTATTGGAAGGATGCTGGCGGATCCTGCCTTCCTACATAAGTTTTTCTTGGAGCAGCTCACAACACTTGGTTGTTCGGTCTGGTGGGAGTTGAA GAATCGTGGTGACAGGATAAAGCAGGAATGGGACCTGGCACTTGTAAATGTATTGACAGTGACAGCATGCAATGCCTTAGTGGTTTGGTCACTTGCTCCT TGTCGTTCATATGGAAGTACATTCCAATCAGATCTACAGAATACACTACAGAAGCTCCCAAATAACATATTTGAAAAGAGCTATCCATTCAGAGACTTTG ACTTGCAGAAGAGAATCCACTCGTTCTTCTTCAAGGCTGCAGAATTATGCATGGTGGGTATAACTGCTGGAGCTGTTCAAGGTTCATTGTCAAATCTTTT AGCCTCTAAGAAGAAGGATAGGGTGTCAGTGACAGTCCCATCTGTAGGTAACTACGCACTGGGTTATGGTGCTTTCCTTGGACTTTACGCGAATGTGAGA TACCAGTTATTGTGTGGGTTTGATAGAGCGGTGGTCAACCACTTTGATGTCATTGGAGTGGCCCTGTTCCTGAGCACAGCTCTCAGGGTAATGAATGATC AGGCTGGGGAGGTGTCGAGGCTAGCATGGCTCGGAGTGGAGGTAGACCCTCTTGCTCATTCAGAAGACCTTCTAAAGAAAGCATACAACAGACCGTCATC ATCAGAGGACACCAATGCAGCAGAATCATCAAAATGGTTCATATCAAAGAAAGCACTTGTTTCAGGGCTGGGGCTTCTGGGCATCAAACAAGGAAATGAA GAGTCGGGTAGCAGTGAGCCAGCGGCAAGTAAGCCTCGCAGGAAGAGAATTGTCCGTAAGAAGGTAGGTGCTGGTTCGGCATAG
AA sequence Show only first row Show all	>Lus10001610 pacid=23175423 polypeptide=Lus10001610 locus=Lus10001610.g ID=Lus10001610.BGIv1.0 annot-version=v1.0 MSNLVLKIPATQLPTTAPNPSAASRSSPSIPHPRFIITRRRRRTPTLPISCSCSSPSPAIGGGNDVAQLERCFMAAPLMKSSGPVMKGNPKSGGAVTLEK GKVEKISKSKAPEVETGGGGGDIGKIINNGGGDGGDDDGDDDDYFDDFDEDGEEGDEGGLFRRRRVFEELFDKKFVDAVLNEWQKTMMDLPAGIRQAYEM GLVSSTQMVKVLAINARPTTTRFISRTLPQSISRAFIGRMLADPAFLHKFFLEQLTTLGCSVWWELKNRGDRIKQEWDLALVNVLTVTACNALVVWSLAP CRSYGSTFQSDLQNTLQKLPNNIFEKSYPFRDFDLQKRIHSFFFKAAELCMVGITAGAVQGSLSNLLASKKKDRVSVTVPSVGNYALGYGAFLGLYANVR YQLLCGFDRAVVNHFDVIGVALFLSTALRVMNDQAGEVSRLAWLGVEVDPLAHSEDLLKKAYNRPSSSEDTNAAESSKWFISKKALVSGLGLLGIKQGNE ESGSSEPAASKPRRKRIVRKKVGAGSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	0	1
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	1.7	0.7694
AT5G14970			unknown protein		Lus10014506 [exp]	2.4	0.7780
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	4.5	0.7519
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	5.8	0.7937
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	13.8	0.7219
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Lus10034276 [exp]	13.9	0.7043
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	14.4	0.6699
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10015532 [exp]	15.1	0.7179
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	21.2	0.7111
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	34.0	0.7019

Compare expression of checked genes

Lus10001610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.