Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68180 142 / 9e-41 RING/U-box superfamily protein (.1) AT2G40830 94 / 6e-22 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 87 / 2e-20 RING/U-box superfamily protein (.1) AT3G56580 89 / 4e-20 RING/U-box superfamily protein (.1.2.3) AT5G59550 86 / 8e-19 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 85 / 2e-18 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G39720 80 / 8e-17 RHC2A RING-H2 finger C2A (.1) AT3G19950 79 / 9e-17 RING/U-box superfamily protein (.1) AT3G13430 79 / 1e-16 RING/U-box superfamily protein (.1.2.3) AT1G55530 78 / 3e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022967 [exp] 419 / 6e-149 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10001582 [exp] 94 / 8e-23 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 94 / 3e-22 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 94 / 4e-22 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 93 / 1e-21 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 88 / 4e-20 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10024372 [exp] 88 / 9e-20 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 87 / 9e-20 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10025612 [exp] 87 / 2e-19 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127600 [exp] 184 / 6e-56 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 176 / 5e-53 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 97 / 9e-23 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 93 / 7e-22 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G087800 [exp] 93 / 8e-22 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G032100 [exp] 93 / 8e-22 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.001G243300 [exp] 91 / 1e-20 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.007G074014 [exp] 88 / 5e-20 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 88 / 7e-20 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G090500 [exp] 87 / 1e-19 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10001611 pacid=23175435 polypeptide=Lus10001611 locus=Lus10001611.g ID=Lus10001611.BGIv1.0 annot-version=v1.0 ATGTCCTTGGCCACCCCACACCGCCCTCGAGTCGTCGTTAATGGCGTGAGGAGAATGAGAACCTTTCACTACTTTTGGTGCCATCATTGTCGAAGAACTC TACGATTCGCTTCTATAAACCCACGTAGAATGTCATGTCCTTGTTGTTTCGTAACGTTGAGTCACGAGCTTGACATATCACGTCCAATGTTAACTAGCCG GCTCCCCGAACCAACAAGATTACTTGAATCGTTGTCCCTTATGGTGGATCCAAGAGTTAGTACTCCATATAATCATCCCTCAAGAAACGAAGATCAACAC TCCATCGATCATTGGATTACCCTTCATTTCCCTCCGAGACCACCTCCTCTTCAAGACACCACGACACCAACCGACGACCGACCAGGGCCACCGCCAGCCT CCTCTTTGGCAATCGAAGCCTTATCGACGGTGAAAATCGGAGCTATGAATATAGCGAAAGACCCCAACTGTCCGGTATGCAAAGAAGAGTTCAAGATGGG AGAAGAAGCAAGGGAGATGCTGTGCCACCACTTGTACCATTCTAACTGCATCGTACCCTGGCTCACCATGCACAACACGTGTCCGGTTTGTCGGTACGCG CTTCAGATCGACGAACTGCAGCCGGGTGGCCGCACAAGCAATAACTATGATCTGGAGGAGTTAACGGTGAACGGAGTAAACTGGGTGAGGGACCGGGTAT TTTCCATGGGGCGGCGACCCATTCGAATCGTTTCGGATTGGACGCTTCTGTGCATGGAAATGCTGGATCGTAGGATCATTGGTTTGATTAATACCAACGA TGATCACTACTTTTCCACCGGAGCAACAGAGATCAATGATGAATCGGGGGGCTCCAGGTGGTGGCCATCTTGGCTAATTCTGTGA
AA sequence Show only first row Show all	>Lus10001611 pacid=23175435 polypeptide=Lus10001611 locus=Lus10001611.g ID=Lus10001611.BGIv1.0 annot-version=v1.0 MSLATPHRPRVVVNGVRRMRTFHYFWCHHCRRTLRFASINPRRMSCPCCFVTLSHELDISRPMLTSRLPEPTRLLESLSLMVDPRVSTPYNHPSRNEDQH SIDHWITLHFPPRPPPLQDTTTPTDDRPGPPPASSLAIEALSTVKIGAMNIAKDPNCPVCKEEFKMGEEAREMLCHHLYHSNCIVPWLTMHNTCPVCRYA LQIDELQPGGRTSNNYDLEELTVNGVNWVRDRVFSMGRRPIRIVSDWTLLCMEMLDRRIIGLINTNDDHYFSTGATEINDESGGSRWWPSWLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68180			RING/U-box superfamily protein...		Lus10001611 [exp]	0	1
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	4.2	0.9364
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	6.6	0.9361
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	7.5	0.9298
AT4G16400			unknown protein		Lus10039068 [exp]	9.7	0.9230
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	12.2	0.9251
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	14.7	0.9145
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	16.4	0.8719
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	20.3	0.9090
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	21.5	0.9099
AT1G23530			unknown protein		Lus10030608 [exp]	21.8	0.9112

Compare expression of checked genes

Lus10001611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.