Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25290 241 / 2e-78 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 62 / 1e-10 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G77860 61 / 2e-10 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT1G52580 59 / 9e-10 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 57 / 4e-09 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G12750 56 / 9e-09 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT2G29050 56 / 1e-08 ATRBL1 RHOMBOID-like 1 (.1.2) AT5G07250 54 / 2e-08 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT3G53780 54 / 3e-08 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 54 / 3e-08 ATRBL2 RHOMBOID-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022969 [exp] 546 / 0 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2) Lus10023145 [exp] 84 / 6e-18 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10000628 [exp] 82 / 2e-17 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10027436 [exp] 60 / 7e-10 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10017840 [exp] 59 / 1e-09 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10024497 [exp] 58 / 2e-09 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10004965 [exp] 54 / 5e-08 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10005464 [exp] 54 / 8e-08 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 52 / 2e-07 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019500 [exp] 275 / 9e-92 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.017G112900 [exp] 75 / 8e-15 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2) Potri.009G031900 [exp] 58 / 2e-09 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G108700 [exp] 56 / 1e-08 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 56 / 1e-08 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 55 / 2e-08 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 55 / 2e-08 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G241300 [exp] 53 / 1e-07 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 49 / 1e-06 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 46 / 2e-05 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10001612 pacid=23175427 polypeptide=Lus10001612 locus=Lus10001612.g ID=Lus10001612.BGIv1.0 annot-version=v1.0 ATGATGAACTCATCCTCGGCGGCTGCCGCTGGACTTCCACCTTGGTGGGTACCAATCCATATCCGGAAGGTGGATGTCTCCCCCACAGCTCTCAGCTTCA AAACGAATACCGCTTCTCTTCACTTGCACTACCTTCTCCGCTCCTTCTTCAAGAGATTGCCGCATCTCAATCACATTCCCAAGTTGAAGGATGTATGGTG TGAGAAAGCATCCCAAATTAAGGACATCAATTTGCTCCAAATTCCAAATGATTTATTTGCATCCACCAGTGCATATTATCTCTGTCTTCACCCTGGGGTG GAAACAAACAAGGACAGTGGAACTACGAAGCAAACACATTCACAGACATCTAGAAGAAATTCACCAGGTGGAAGAAACTTGACAAATGTTCTTCTTGCTG CCAACATTCTAGTTTTTGCTGCTCAATATGCCACGGGAGGAGAGTGGATGTTCTGGGGAGCTAAGATCAACAGTCTCATTTACAGAGGAGAGATTTGGAG ATTGGTGACCTCTTCATTTTTGCATTCTGGCGTTCTGTATCTCATGGTGAACTGCTATTCTTTGAATTCAGTTGGCCCTGCCGTTGAGAGTCTTATTGGA CCGAAGAGATTTCTAGCAGTCTATTTCACCTCTGCAATTGCAAGTTCAACGGCAAGTTATTGGTTATGCAAAGGACCTGCAGTTGGTGCCTCTAGTGCAG TCATCGGATTAGTTATTGGTTTACTTAACCAGAAAATTGACAATTGGGGCCATGTGGGAGGGTTGCTTGGTGGAATTGCTATATCATGGTTGGTTGGACC TGCCTGGAAATTGGACGACTCGTTATCAAAAGATGGGCGCAAAGTTTTCATCGACAGTGCACCTCTCAAATTCTTTACCAGCATAGCAAGTAAAGGAAAT GGGGGACCCTAA
AA sequence Show only first row Show all	>Lus10001612 pacid=23175427 polypeptide=Lus10001612 locus=Lus10001612.g ID=Lus10001612.BGIv1.0 annot-version=v1.0 MMNSSSAAAAGLPPWWVPIHIRKVDVSPTALSFKTNTASLHLHYLLRSFFKRLPHLNHIPKLKDVWCEKASQIKDINLLQIPNDLFASTSAYYLCLHPGV ETNKDSGTTKQTHSQTSRRNSPGGRNLTNVLLAANILVFAAQYATGGEWMFWGAKINSLIYRGEIWRLVTSSFLHSGVLYLMVNCYSLNSVGPAVESLIG PKRFLAVYFTSAIASSTASYWLCKGPAVGASSAVIGLVIGLLNQKIDNWGHVGGLLGGIAISWLVGPAWKLDDSLSKDGRKVFIDSAPLKFFTSIASKGN GGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10001612 [exp]	0	1
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10040173 [exp]	1.4	0.9223
					Lus10034398 [exp]	19.2	0.8936
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	19.3	0.8905
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	25.9	0.8783
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	28.4	0.8914
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	28.8	0.8859
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	35.3	0.8805
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	36.5	0.8775
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	36.8	0.8772
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	37.8	0.8407

Compare expression of checked genes

Lus10001612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.