Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10780 533 / 0 F-box/RNI-like superfamily protein (.1) AT3G26922 48 / 6e-06 F-box/RNI-like superfamily protein (.1) AT1G55030 46 / 3e-05 RNI-like superfamily protein (.1) AT5G56560 42 / 0.0006 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022971 [exp] 856 / 0 AT1G10780 534 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019400 [exp] 596 / 0 AT1G10780 586 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.001G210800 [exp] 565 / 0 AT1G10780 549 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001614 pacid=23175420 polypeptide=Lus10001614 locus=Lus10001614.g ID=Lus10001614.BGIv1.0 annot-version=v1.0 ATGGATTCTCTACCAGATGCCATCCTCCCATCAATATTCACAAGCCTTTACAGTGCTAGAGAGATTGCTCTTTACAACTGTGTGTCAAAGAGATGGAAAG ACTCTTTGCGATATCTCAGAACCCTCTATTTCCCACGCAGCGCCTTTGAAAAGCACACCGGTCATGACCATTCAGATACTATCGTGTTGAGGATGATAGC TGCTCTCGATCGGCTTGAAAAGCTTGTGGTATACAGCCCCTTTACAAGCAAAGGCCTAGCCTCGTGGCTGGTTATTGCTGGCTCGTCGCTGAAGCAGATC GAACTTAGAATGGATAACACGAGTATGCCCGAGTACCAGAGTTTTATAGACAACAGTCCCTCAAAGATGGATTGCCTTGCTTATGCTAGGAACGTCGAGT CCATGAAGCTTTGGGGGGTTCTAATGACAGAACCCCCCAAGTGGGACACCTTTAAAAAGCTTCACACCCTCGAAATTGTTGGAGCTAGGCTGAAGGATTC TGCATTGACATCTGCACTTAAAGGATGCCCTAATTTGAAGACACTGGTACTTCTTGGTTGTGAAGGGAACCAGAAGGTTTCTATCGATTTGCCTCACCTG GAGAGATGCAAAATGGCCTTCCATGGCCAGGGGAACTGCTCGTTCTCGTTGAATTCCCCAAAAATCGAGGACCTTGAGGTGCACGGGTGTAGTTGGATTG GAGTTCCCCATTCCAAATGTTTGAAGAATCTCACCATTTCCAACGAAGCAGGAAGAGTATATATGGTAGACTTTGGGGAACTCACTGCACTTGAATCTTT AACTATAAGAGGAGTTCAATGGTGTTGGGATGCCATTAGTACAATTATTAATTTGGCAAGTGAGGTCAAGCATCTGTTCATGAAAGTTGAGTTCACTGGT GACATAGGTTCCTTAGATCCTTTCCCAGAGGTGGATTTTGTGGAGTTCTTCAACAGCCATCCCAAATTGCGTAAGTTTGAGATTCACGGAGCCATGTTCG CCGCTCTTTGCCACAAGAACAGCCTCATCAATCTGGAGTCTGGCTTTGTAATTCCCAACCTGGAGGAAGTGGTGATACAAGTGAGGTCGCCATTGAAAGC TGAACAAAAGATCAACATCCTGGAGTCGCTGATCAAGTATGGGAAGAATCTGAAGACAATGACAATTCGGATCCTCGAGATGAAGAGCAGCCATGGCAGT GCGGATGATTTCTTCGCCGATATTTGCAGGTTTCAGCATCTCAATCGCAAGATTGTTAGGATAGCATAG
AA sequence Show only first row Show all	>Lus10001614 pacid=23175420 polypeptide=Lus10001614 locus=Lus10001614.g ID=Lus10001614.BGIv1.0 annot-version=v1.0 MDSLPDAILPSIFTSLYSAREIALYNCVSKRWKDSLRYLRTLYFPRSAFEKHTGHDHSDTIVLRMIAALDRLEKLVVYSPFTSKGLASWLVIAGSSLKQI ELRMDNTSMPEYQSFIDNSPSKMDCLAYARNVESMKLWGVLMTEPPKWDTFKKLHTLEIVGARLKDSALTSALKGCPNLKTLVLLGCEGNQKVSIDLPHL ERCKMAFHGQGNCSFSLNSPKIEDLEVHGCSWIGVPHSKCLKNLTISNEAGRVYMVDFGELTALESLTIRGVQWCWDAISTIINLASEVKHLFMKVEFTG DIGSLDPFPEVDFVEFFNSHPKLRKFEIHGAMFAALCHKNSLINLESGFVIPNLEEVVIQVRSPLKAEQKINILESLIKYGKNLKTMTIRILEMKSSHGS ADDFFADICRFQHLNRKIVRIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	0	1
AT3G12870			unknown protein		Lus10031776 [exp]	2.0	0.9588
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	2.8	0.9539
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10019336 [exp]	4.9	0.9374
AT3G03130			unknown protein		Lus10009977 [exp]	4.9	0.9523
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	6.5	0.9378
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	6.9	0.9499
AT3G12870			unknown protein		Lus10031198 [exp]	7.1	0.9383
AT3G01840			Protein kinase superfamily pro...		Lus10022345 [exp]	7.2	0.9333
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	8.5	0.9372
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	9.2	0.9332

Compare expression of checked genes

Lus10001614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.