Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09580 263 / 9e-90 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 258 / 9e-88 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 235 / 7e-79 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 181 / 1e-57 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 157 / 2e-48 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 153 / 1e-46 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 153 / 2e-46 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 152 / 3e-46 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 142 / 5e-42 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 101 / 5e-27 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022972 [exp] 360 / 2e-128 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 247 / 3e-83 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 145 / 6e-44 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 140 / 1e-41 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 137 / 9e-41 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 138 / 2e-40 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 133 / 2e-38 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 114 / 2e-31 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 61 / 4e-11 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210900 [exp] 281 / 5e-97 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 271 / 4e-93 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 264 / 3e-90 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 169 / 7e-53 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 168 / 1e-52 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 163 / 2e-50 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 158 / 9e-49 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 93 / 4e-24 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 59 / 2e-10 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G369000 [exp] 46 / 5e-06 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10001615 pacid=23175425 polypeptide=Lus10001615 locus=Lus10001615.g ID=Lus10001615.BGIv1.0 annot-version=v1.0 ATGATGACCATGAATGCTCCATGTTTCTTCTCGCTCTTACTCCTGACGTCGTCATTCTGGATTAGGACGGATGCGATATGGTTGAATCTCCCTTCCTCAG GGACCAAATGCGTCTCCGAAGAACTCAGCAACAAGGTCGTCGTCCTCGCCGACTACGTTGTCGTCTCCGATGATAATACTCAACACCCCACTATCTCCGT CAAGGTATCATCTCCATATGGCAATAATCTTCATCATTCGGAGAATTCTATACAAGGTCAATTTGCATTCACGACTGAGGAGGCTGGCAATTATCTTGCA TGCTTCTGGGTGGATAGCTATGGTCAGGGAAAATCTAATGTAAGTGTTAACCTTGATTGGAAGACTGGAATTGCAGCTAAGGATTGGGAAACAGTTGCCA AGAAAGAAAAGATTGAGGGTGTTCAAATGGAGCTGAAGAAACTCGAAGGAGCGGTGGAAGCTATCCATGAGAACTTGCTTTATCTCAAGAACAGGGAATC TGAGATGAGGATCGTGAATGAGAAAACGAACAACAGGGTAGCTTGGTTCAGTATAATGTCTCTTGGTGTCTGCATCTTGGTATCTGTTGTGCAACTCTGG CACCTGAAGCGCTTCTTCCAGAAAAAGAAGCTCATCTAA
AA sequence Show only first row Show all	>Lus10001615 pacid=23175425 polypeptide=Lus10001615 locus=Lus10001615.g ID=Lus10001615.BGIv1.0 annot-version=v1.0 MMTMNAPCFFSLLLLTSSFWIRTDAIWLNLPSSGTKCVSEELSNKVVVLADYVVVSDDNTQHPTISVKVSSPYGNNLHHSENSIQGQFAFTTEEAGNYLA CFWVDSYGQGKSNVSVNLDWKTGIAAKDWETVAKKEKIEGVQMELKKLEGAVEAIHENLLYLKNRESEMRIVNEKTNNRVAWFSIMSLGVCILVSVVQLW HLKRFFQKKKLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	1.7	0.8411
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036108 [exp]	2.4	0.8069
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	3.5	0.7851
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	4.0	0.7548
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10000521 [exp]	14.0	0.7055
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	19.1	0.7710
AT5G26250			Major facilitator superfamily ...		Lus10021926 [exp]	23.9	0.7382
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	24.1	0.7274
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	25.5	0.7401
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	26.6	0.7527

Compare expression of checked genes

Lus10001615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.