Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45310 185 / 4e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022973 [exp] 619 / 0 AT5G45310 189 / 1e-57 unknown protein Lus10022975 [exp] 141 / 2e-38 AT4G35380 176 / 4e-48 SEC7-like guanine nucleotide exchange family protein (.1) Lus10010582 [exp] 107 / 3e-29 ND 41 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234300 [exp] 245 / 6e-79 AT5G45310 229 / 1e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001616 pacid=23175436 polypeptide=Lus10001616 locus=Lus10001616.g ID=Lus10001616.BGIv1.0 annot-version=v1.0 ATGGCGGATTTGACAGTACTTCTGTCAATGGTCACTAAGCGGCCGCTTTCACTGGGATTCTCACTGGTGGCGTTCGCTATCAAAGCAGGGTTCCTGGTGA TTAGCACATGGGCGGAGCTGATAGCCGGATCGATCAATTTGCATCTGAGATTGTTTCGGAGTTGCATCATTTGGATTATCGCCCTCGTCTCGCTTCCGGT TCGGATTTCTACCGCCTTGCAGAAGGAGAGAATGCTGGAAGAGCGATTGGCCCTCGTGCAGGCTGAGCTAACTGATGTTAATTGGGAAAGGAAGGTGCTT GAGGATCACCTGCGTCTGGCCGTTAAGGAATGTAACGACTTGGATTCGTTGCTGGCTGAAGCTGAAGATGAAGCTGATAAAATGGTTGCCAAAATCCAAC TGCTGGAACAACAGTTGACTACTCTGAGAGATGAAAATCATCAGCTAAAGCTCATCCAAGGCGAGCAGCAGCTACGGACGTCCGGACAGAACATCCAGAG CTATGAAGGAAGTGCCGTGGCGGAGAATCAGGCGAGATGCAAGTCCGATCAGTCATCGGTCATGAACAGGTCGTCAACGGATCATCGTCCTATGATGGCC GGATCAGGACGCAGTATTCCTAGAAACAGGAACGGAGAAGTATTGGAACAGAGGGACCTTGCATTTTGGCAGAGTGTGTTGAGCGCGGTGCTGTCGCTGG CAGTTGGGATGATCATATGGGAGGCTAAGGATGCTGCTAATTGTATGCCCCTAGTTATTGCTCTCTACACTGTCGTTGGAATGTCGCTGAAGAATGTGGT GAAGTTCTTTTCGACAATCCACAACAAGCCGGCTTCCGATGCAGTTGCTCTCTTGAGCTTCAACTGCTTCATCCTCGGAACACTCACTTACCCGACACTC CCCAGGGTAGTTCGGACTCTCGGATCGGTGGCTTCGGACTATTTCAGCCCCAGAATGGGCTAG
AA sequence Show only first row Show all	>Lus10001616 pacid=23175436 polypeptide=Lus10001616 locus=Lus10001616.g ID=Lus10001616.BGIv1.0 annot-version=v1.0 MADLTVLLSMVTKRPLSLGFSLVAFAIKAGFLVISTWAELIAGSINLHLRLFRSCIIWIIALVSLPVRISTALQKERMLEERLALVQAELTDVNWERKVL EDHLRLAVKECNDLDSLLAEAEDEADKMVAKIQLLEQQLTTLRDENHQLKLIQGEQQLRTSGQNIQSYEGSAVAENQARCKSDQSSVMNRSSTDHRPMMA GSGRSIPRNRNGEVLEQRDLAFWQSVLSAVLSLAVGMIIWEAKDAANCMPLVIALYTVVGMSLKNVVKFFSTIHNKPASDAVALLSFNCFILGTLTYPTL PRVVRTLGSVASDYFSPRMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45310			unknown protein		Lus10001616 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	15.5	0.8077
AT5G67390			unknown protein		Lus10011531 [exp]	20.8	0.7625
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	28.8	0.8016
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	30.1	0.8043
					Lus10033739 [exp]	36.9	0.8017
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	100.5	0.7578
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	134.8	0.7713
AT5G52450			MATE efflux family protein (.1...		Lus10001318 [exp]	195.1	0.7531
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	204.0	0.7375
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	261.9	0.7415

Compare expression of checked genes

Lus10001616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.