Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03880 835 / 0 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 494 / 2e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 457 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 456 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 453 / 3e-151 MEF22 mitochondrial editing factor 22 (.1) AT3G26782 451 / 7e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 446 / 5e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G23330 450 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 447 / 1e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 447 / 1e-149 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022974 [exp] 815 / 0 AT2G03880 542 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 484 / 1e-163 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 482 / 1e-162 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 472 / 3e-159 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022629 [exp] 468 / 2e-157 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 471 / 3e-155 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 471 / 6e-155 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 457 / 5e-154 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 453 / 5e-151 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208000 [exp] 896 / 0 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 489 / 1e-166 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 488 / 9e-162 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 479 / 1e-161 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 479 / 4e-160 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 472 / 7e-159 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 469 / 4e-158 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 473 / 2e-157 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 464 / 6e-157 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 472 / 2e-156 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001617 pacid=23175431 polypeptide=Lus10001617 locus=Lus10001617.g ID=Lus10001617.BGIv1.0 annot-version=v1.0 ATGAAACGCATCGCCGCCAGGCTAAAGCCACCGCCTTCACCGCTCGTCTCGACGCCGACCACGACGAATCCTTCATCCGCCTCCCACACTTCTCCGATCT CGGAATTTACTCAGTTATGCTATCAACAAGATATACCCAGAGCTATGAAAACTCTGGACGCCCTGGAAAGCCAACGGCTGTGGGGCGACTCGCTAGCCTA CTCCCAACTCCTGAAATCCTGCTACTCCTCCCGCGCCCTACCTCAAGCCCTCCGCCTTCAGTCACACCTCCTTTCTTCTCCACACCCTCCTCATACTTTC CTTCTCAACATCTTGCTCAACATCTACGTCAAATTACGTCACTTGCAACACGCCCGTAACTTGTTCGACCAAATGCCTCACAGAAATGTAGTCTCCTGGA CTACTATAATCTCTGCACACGCTAATGTCCCTGACCTTTCCCACTTGGCTCTCGAGTTTCTCGTTTCTATGCTTCGCCATGGCGTCCTCCCTAACATGTT CACCTACTCTTCTGTCTTCAGAGCATGTGCATCCGTGTCTCATCTCTCGCAGCTTCATTCCAGTATTTTCAAGCATGGGTTGGAATCCGATGTATTCGTC AGGAGTGCTCTTATTGATGCTTATTCCAAATGGGGTAGCTTGGGAAGTGCACTCAATGTGTTTGATGAGATGGTGACTGGCGATTTGGTGGTTTGGAATT CCATCATTGCTGCTTTTGCACACAACAGTGATGGCCATGAAGCGCTGCATCTTTTCAAGCGGATGAAGAGATCCGGATTTATGCCGGAGCAATCGTCGCT GACTAGCGTTCTGACTGCCTGTACCAGTTTAGCGCTTCTGGAATTAGGGAGGCAGGTTCATGTTCATGTGTTTAAGTACGATCAGGACTTGATCCTGAAT AACGCGCTCCTTGATATGTATTGCAAGTGTGGCTGCTTGGAAGATGCCAACACCATTTTCACTAGGATGGTTGATAAGGACGTCATCTCCTACAGCACCA TGATTGCTGGGCTGGCGCAAAATGGTTATAGCAGACAGGCACTGGAGTTGTTCGAGTCCATGAAGGGTTCTTGCATAAAACCCAACTACATTACGCTTCT TGGTGTTCTGTTTGCTTGCAGCCATGCCGGGTTGGTGGATGATGGCTGGCGCTATTTTGAATCCATGAAAAAGATTTACGGGATTGATCCTGGCAGGGAA CACTATGCTTGTATGCTTGATCTTCTTGCGAGGGCGGGAAAGCTCCAAGAAGCAGTTAAACTGATGGAGGAGATGGATTTTGAGCCAGATGTAGTGATGT GGAGAACTTTACTTGATGGGTGTAGAGTTCACAAAAATGTGGATCTGGCAATGCATGCTGCTGAAAAGATTTTGAAGCTAAATCCACAAGATGCTGGAAG CTACATAATCCTGTCTAACATCTATGCAAACGCTCAAAGGTGGGACGAGGTTGCAAAGATAAGGAGGGCAATGAACGAGAAGGGGATCAGAAAAGAACCT GGATGCAGCTGGATTGAAGTGGATAAACAGATTCACGCTTTCACTCTAGGAGATGAATCGCACCCACAAATCAATGACATCAATGTCCAGCTGGAATTGC TGATTCAACGACTCATGGGAGGAGCTGGTTATGTTCCGGACACCAATTTTGTGCTCAAGGACCTGGAAGGGGAACAAAGGGAGGATTCCCTGAGGTACCA CAGCGAAAAACTGGCACTCATGTTTGGTCTAATGAATTTGCCCAAGGGACAGGTGATTAGGATCAGAAAGAACCTCAGAATATGTGGCGACTGTCATCGG TTTGTGAAACTTGTGACAAAGTTGGAGAAGAGAAGCATCGTCATAAGGGATCCCATCCGGTACCACCATTTCTCTGATGGAGTTTGCTCTTGTGGAGATT ACTGGTAA
AA sequence Show only first row Show all	>Lus10001617 pacid=23175431 polypeptide=Lus10001617 locus=Lus10001617.g ID=Lus10001617.BGIv1.0 annot-version=v1.0 MKRIAARLKPPPSPLVSTPTTTNPSSASHTSPISEFTQLCYQQDIPRAMKTLDALESQRLWGDSLAYSQLLKSCYSSRALPQALRLQSHLLSSPHPPHTF LLNILLNIYVKLRHLQHARNLFDQMPHRNVVSWTTIISAHANVPDLSHLALEFLVSMLRHGVLPNMFTYSSVFRACASVSHLSQLHSSIFKHGLESDVFV RSALIDAYSKWGSLGSALNVFDEMVTGDLVVWNSIIAAFAHNSDGHEALHLFKRMKRSGFMPEQSSLTSVLTACTSLALLELGRQVHVHVFKYDQDLILN NALLDMYCKCGCLEDANTIFTRMVDKDVISYSTMIAGLAQNGYSRQALELFESMKGSCIKPNYITLLGVLFACSHAGLVDDGWRYFESMKKIYGIDPGRE HYACMLDLLARAGKLQEAVKLMEEMDFEPDVVMWRTLLDGCRVHKNVDLAMHAAEKILKLNPQDAGSYIILSNIYANAQRWDEVAKIRRAMNEKGIRKEP GCSWIEVDKQIHAFTLGDESHPQINDINVQLELLIQRLMGGAGYVPDTNFVLKDLEGEQREDSLRYHSEKLALMFGLMNLPKGQVIRIRKNLRICGDCHR FVKLVTKLEKRSIVIRDPIRYHHFSDGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	0	1
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	1.0	0.9411
AT5G25500			unknown protein		Lus10002897 [exp]	1.7	0.9205
AT3G51010			unknown protein		Lus10042347 [exp]	3.2	0.9321
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	5.3	0.8867
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	7.9	0.9061
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	10.5	0.9129
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	11.6	0.8869
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	14.3	0.8646
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	15.6	0.8677
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	17.0	0.8865

Compare expression of checked genes

Lus10001617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.