Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17410 380 / 6e-123 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76510 352 / 1e-116 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 333 / 1e-109 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76110 52 / 5e-07 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 47 / 2e-05 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022981 [exp] 1026 / 0 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10013852 [exp] 484 / 2e-167 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10016045 [exp] 310 / 3e-100 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10026569 [exp] 221 / 2e-69 AT1G76510 164 / 1e-51 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10007127 [exp] 52 / 1e-06 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 49 / 6e-06 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 46 / 5e-05 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208900 [exp] 499 / 2e-172 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 374 / 5e-124 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 360 / 2e-118 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 355 / 1e-117 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.005G257300 [exp] 181 / 5e-52 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.001G315200 [exp] 57 / 2e-08 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 49 / 7e-06 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10001618 pacid=23175434 polypeptide=Lus10001618 locus=Lus10001618.g ID=Lus10001618.BGIv1.0 annot-version=v1.0 ATGGCTGATCCGAAAGAAGCTCAAGATGTTAATGTTGATGTTAATGCTATGACTATGGTTGCTGCTGGTGGAGAGCTCAACATCAGTCTAGATAATGCTG CTCAGGATGGTCAGCATTCTCCTCCCCAACTTCATTTTGAAAATAAGGTGGGAGATTCGTCCCCATTGGATGATACTTCTGTTCCTATGAAAGTTGAAAC CCTAAATTCTACAAGTGATTGTACTCAGCCTGCCCCTAGCATCGAACTTGCTCCTGAGCTTCATGATACTGTGCCTAATTCCTTGCAATGTTCGGATGCA ATGCCCAATGCTACTGGTCCTGAGTTCCTCTCTAGTAATATAGAGTCTGTTCACCGTCCTCCTTGTGCAAAACCCACTGCCAATGGATCATTAGACGATG CAGGCCTAGTTTCTACTGTAAAGCAAGATACAGACAATGAAGATTCAAGTTTCAAATCCAAGCACTCTGATGATGGCAGCCCTGTTGTTCCAGAGGATAA GCAGCAACCTTCTATAGCTGAACATGAAGAGAACTCGGTTTATCCTCCTGCTGGTTACCAGTCTACTGAGAGTAGAGATGATCACCCTGGAGAGAAAGTA TCCCTGTTGAAAGATGCAATGGCCAGGGCTGATTTGTCTTTGCATTCGGAGGCTAAGAAGGGACTTCAAGAACCCAAGTTGGATGAAGAAACCGAAGAAC CAATGAGAACCCCTGGTAAAACTTTCCTTTTGGAACCTTCTTCAGATGATGGTTACGAGTCAGGAACAGAGGAGGAACAAGCAGAGTTCATGAAGGAGGT TGAAACTTGTTATAAAGAAAATTACTTGGAATTTAAGCCCCCAAAGTTCTATAAAGAAGAACTCAATCTTCTTAAGTTATGGAGAGCTGTGATCAAACTA GGAGGATATGAACAGGTGACATCATGCAAGTTATGGCGACAAGTTGGCGAATCATTTAGGCCTCCAAAGACCTGCACAACCGTCTCCTGGACATTCAGAA TTTTTTATGAGAAGGCATTGCTAGAATATGAGAAGCAGAAAATGCGCAACGGTGAGCTTCCTTTCTCTGATGGTCTACCAACAGAGGCTACTAGGCCTGG AAACCAGTCTGGGGGAAGCCTATCCCTTGTCTCAGGACGAGCGCCACGAAGAGATGCTGCTGCTCGTGCAATGCAGGGTTGGCATTCTCGCCTTCTTGGT AATGATGAGGTCAGTCCACCAGTCATTAAGGATAAGAACTTGAGCTCTATTCCCAAGGTTGACAAGCCATTGAAAACAAATGGTCTACTAAAGCGGAAGA AGCCATCTAGTGCTGAGCGTTCCGTCCATGTTTCTCCCTTGAAAACAATGAGGACACAAGCGGATGCAGTGGTAGTTGACGTAGGACCCCCAGCTGAATG GGTGAAGATCAATGTACAACGAACTAATGATTGCTTCGAGGTATATGCTCTCGTTCCAGGCCTTTTACGTGAAGAGGTTCATGTCCAGTCTGATCCAGCA GGGCGCTTGATTATATCTGGCCAGCCAGAGCAACTCGAGAATCCTTGGGGTGTTACCCCATTTAAAAAGGTGGTCAGCCTACCTTCCAGGATAGATGCAC ATCAGACATCCGCTGTGGTGACCCTGCACGGCCAGTTATTCGTTCGGGTTCCTTTTGAGCAGTCTGACGTCTAG
AA sequence Show only first row Show all	>Lus10001618 pacid=23175434 polypeptide=Lus10001618 locus=Lus10001618.g ID=Lus10001618.BGIv1.0 annot-version=v1.0 MADPKEAQDVNVDVNAMTMVAAGGELNISLDNAAQDGQHSPPQLHFENKVGDSSPLDDTSVPMKVETLNSTSDCTQPAPSIELAPELHDTVPNSLQCSDA MPNATGPEFLSSNIESVHRPPCAKPTANGSLDDAGLVSTVKQDTDNEDSSFKSKHSDDGSPVVPEDKQQPSIAEHEENSVYPPAGYQSTESRDDHPGEKV SLLKDAMARADLSLHSEAKKGLQEPKLDEETEEPMRTPGKTFLLEPSSDDGYESGTEEEQAEFMKEVETCYKENYLEFKPPKFYKEELNLLKLWRAVIKL GGYEQVTSCKLWRQVGESFRPPKTCTTVSWTFRIFYEKALLEYEKQKMRNGELPFSDGLPTEATRPGNQSGGSLSLVSGRAPRRDAAARAMQGWHSRLLG NDEVSPPVIKDKNLSSIPKVDKPLKTNGLLKRKKPSSAERSVHVSPLKTMRTQADAVVVDVGPPAEWVKINVQRTNDCFEVYALVPGLLREEVHVQSDPA GRLIISGQPEQLENPWGVTPFKKVVSLPSRIDAHQTSAVVTLHGQLFVRVPFEQSDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	0	1
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	2.8	0.9138
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	4.1	0.8814
AT3G58650			unknown protein		Lus10016854 [exp]	8.8	0.9143
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	9.6	0.8737
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001605 [exp]	12.4	0.8656
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	14.1	0.8611
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	14.4	0.8997
AT5G26910			unknown protein		Lus10020689 [exp]	15.0	0.8642
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	15.8	0.8858
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	16.8	0.9065

Compare expression of checked genes

Lus10001618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.