Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38190 942 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 823 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 810 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT1G02730 629 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 578 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 522 / 6e-169 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G17420 363 / 8e-109 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 360 / 4e-107 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G44030 357 / 4e-106 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT2G25540 356 / 7e-106 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022982 [exp] 1176 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10013851 [exp] 1027 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1025 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10038008 [exp] 794 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 780 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 641 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10025046 [exp] 640 / 0 AT1G02730 1540 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10030455 [exp] 606 / 0 AT3G03050 1258 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026609 [exp] 605 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170000 [exp] 972 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 956 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.019G049700 [exp] 836 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 820 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 716 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 704 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 648 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 643 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 577 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 576 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10001619 pacid=23175437 polypeptide=Lus10001619 locus=Lus10001619.g ID=Lus10001619.BGIv1.0 annot-version=v1.0 ATGCGTAATCCGGGCGGTCCAGGCAGCAATCAACAAGGAGGGAGTCGGAATGCTGGCACTGCCGGAGGGGGAGGAGGAGGAGGCCAGACCGTGAAATTCG CAAGGCGGACATCGAGCGGAAGGTATGTGAGCCTGTCAAGGGAGGACCTCGACATGTCTGGAGAGTTATCTGGAGACTACATGAACTACACGGTACACAT TCCTCCCACCCCAGACAACCAGCCCATGGATGGGACGTCTGTGGCTGGGAAGGCGGAGGAGCAGTACGTGTCAAATTCCCTCTTTACGGGAGGTTTCAAC AACGTCACCCGGGCCCACCTCATGGACAAGGTGATCGATTCAGATGTGTCTCACCCTCAGATGGCAGGATCCAGGGGCTCTTCTTGCGCTATGCCTTCAT GTGATGGCAAAGTCATGAAGGATGCTCGTGGCAACGACATCATACCCTGTGAATGCAGGTTCAAGATATGCAGAGATTGTTACCTAGACGCTCAGAAGGC CGCCGGCTTATGTCCAGGATGCAAGGAGCCATATAGACATGGCGAATACGAAGATGACATTCCCAATTTCGCCAATGGGGCACTCCCATTGCCTCCACCA AACAAGGGAGGCTCCAACCCCAACCAAAGTGGGGATTGGCTTTACGAGACCAAAGGCGATTATGGCTACGGGAACGCCTACTGGCCACCTTCAGACGACC TTTATGGGGACGAAGAAGATAACGATGACGAAACTTCCATGCTGGACAGGAACGACAAGCCATGGAAGCCCCTCAGCAAGACAACGCAGGTTGACGCATC TATCCTTACTCCTTACCGAGGCTTCATCGCCATCCGATTTGTGGTCCTCGCCTTCTTCCTTCACTGGAGGCTCACCCATCCTAACAGAGATGCCGTCTGG TTGTGGGCCATGTCTATTGTCTGCGAGCTTTGGTTCGCTTTCTCGTGGATCCTTGATCAAATTCCCAAGTTGTCTCCCGTCAATAGGTCCACCGATCTCG AGGTCCTGAGGGAGAAGTTTGAAATGCCGTCACCGGCTAATCCCACTGGACGGCCAGACCTCCCTGGCGTCGACATGTTTGTGTCGACAGCTGATCCTGA AAAGGAACCGCCTTTAATCACTGCCAACACCATACTATCCATTCTGGCTGCGGACTATCCTGTTGATAAGCTTGCTTGCTACATATCCGACGACGGAGGG GCGCTCTTGACGTTTGAGGCGATGGCGGAGGCTGCAAGCTTTGCTGACATGTGGGTACCGTTCTGTCGTAAGCACAACATTGAGCCCAGAAATCCTGACA GCTACTTCAACTTGAAAGTGGACCCCACCAAGAACAAGAGCAGGCCCGACTTCGTCAAGGACAGGAGGAAGATGAAGAGGGAGTTTGACGAGTTCAAGGT GAGGATCAACAGCCTACCTGATTCGATTAGAAGGAGGTCTGACGCGTTCAACGCTAGAGAAGAGATGAAGATGCTGAAGCTGAAGAGGGAGAGCGGGGCG GACCCGTCTGAGCCTATAAAGATCCAGAGAGCCACGTGGATGGCAGATGGTACACATTGGCCGGGTACTTGGTCCACGTCAGCTGCAGACCATGCAAAGG GGGATCACTCAGGGATTTTGCAAGTGATGTTGAAGCCTCCTAGCTCTGATCCTTTAATGGGAGGCACCAATGACGACAAGATTCTCGACTTCACCGGCAT TGACATTCGGCTTCCCATGTTTGTATACGTCTCTCGAGAGAAAAGACCTGGGTATGACCATAACAAGAAAGCTGGTGCAATGAACTGTTTGGTGAGAGCA TCTGCAATTCTCTCAAATGGCCCTTTTATTCTCAACCTTACCCCGCTGATCGTTATGCAAAGAAGAACACCGTCTTCTTCGATGGGAATATGCGTGCATT GGACGGTCTGCAAGGTCCTGTGTATGTGGGTACAGGAACTATGTTTCGGAGATTTGCTCTATACGGGTTTAATCCTCCAAATCCTGACAAGACTCGCCCA AAAAACGAATCTTCCTCTGCTGAGACACATCCTCTTACTACCACTGACTTCGATCCTGACCTCGACCTTAATTTACTACCCAAAAGAATCTATACCTGTT GCTGAGTACCAAGCTCGACCATTAGCTGACCATCCTGATGTCAAGTATGGGCGCCCTCCCGGTGCTCTTAGGGTGCCCCGAGAACCACTTGATGCTACTA CTGTAGCTGAAGCTGTCTCTGTAATCTCTTGCTGGTATGAGGACAAAACTGAATGGGGAGATCGAGTGGGGTGGATCTACGGCTCTGTTACAGAAGATGT GGTGACAGGTTACCGTATGCATAACCGTGGTTGGCACTCAGTTTACTGTGTCACCAAGCGTGATGCTTTCCGCGGAGGAGCTCCTATCAACTTGACAGAT CGTCTCCACCAAGTGCTAAGGTGGGCTACCGGCTCCGTTGAGATTTTCTTCTCCAGAAACAATGCCTTCCTTGCTTCCAGAAATCTCTTGTTTTTGCAGC GACTCTTCTACCTCAATGTCGGAATCTACCCATTCACCTCCATCTTCCTCATTGTCTACTGCTTCCTACCAGCGCTCTCCCTTTTCTCTGGCTCCTTCAT CGTGGAAAGCGTAACCATTACGTTCTTGGTCTACCTCCTCATCATGACCTTCTGCCTCATTGGTCTAGCCATCTTGGAAGTCAAGTGGTCCGGCATCGCC TTAGAGGAGTGGTGGAGGAACGAGCAGTTCTGGCTCATCTCAGGCACAAGTGCTCACTTGGCTGCCGTGGTACAGGGTCTCCTCAAGGTTATTGCAGGTA TTGAGATCTCTTTCACACTGACATCCAAGGCTGCCGGCGACGACAATGAAGACCTCTATGCAGAGCTCCACCTCGTGAAGTGGACTTCACTCATGATGCC ACCCATTGTCATTGCGATGACCAACATCATAGCCATGGCATGGGCTTTCGTCAGGACAGTATACAGCACCACGCCTTCATGGAGTAAGCTGGTGGGAGGA TGGTTCTTCAGCTTTTGGGTGCTGGCTCACTTGTACCCTTTCGCCAAAGGATTGATGGGGAGGAGAGGGAAGACTCCCACCATTGTGTATGTTTGGTCTG GTCTCATTACAATTACCATCTCACTTCTTTGGATTGCCATTAGCCCGCCAACAGCAGCCACCGAACCAGGCCAACCAGGCGGCACCCAAACAGGTTTCCA GTTGCTGTGA
AA sequence Show only first row Show all	>Lus10001619 pacid=23175437 polypeptide=Lus10001619 locus=Lus10001619.g ID=Lus10001619.BGIv1.0 annot-version=v1.0 MRNPGGPGSNQQGGSRNAGTAGGGGGGGQTVKFARRTSSGRYVSLSREDLDMSGELSGDYMNYTVHIPPTPDNQPMDGTSVAGKAEEQYVSNSLFTGGFN NVTRAHLMDKVIDSDVSHPQMAGSRGSSCAMPSCDGKVMKDARGNDIIPCECRFKICRDCYLDAQKAAGLCPGCKEPYRHGEYEDDIPNFANGALPLPPP NKGGSNPNQSGDWLYETKGDYGYGNAYWPPSDDLYGDEEDNDDETSMLDRNDKPWKPLSKTTQVDASILTPYRGFIAIRFVVLAFFLHWRLTHPNRDAVW LWAMSIVCELWFAFSWILDQIPKLSPVNRSTDLEVLREKFEMPSPANPTGRPDLPGVDMFVSTADPEKEPPLITANTILSILAADYPVDKLACYISDDGG ALLTFEAMAEAASFADMWVPFCRKHNIEPRNPDSYFNLKVDPTKNKSRPDFVKDRRKMKREFDEFKVRINSLPDSIRRRSDAFNAREEMKMLKLKRESGA DPSEPIKIQRATWMADGTHWPGTWSTSAADHAKGDHSGILQVMLKPPSSDPLMGGTNDDKILDFTGIDIRLPMFVYVSREKRPGYDHNKKAGAMNCLVRA SAILSNGPFILNLTPLIVMQRRTPSSSMGICVHWTVCKVLCMWVQELCFGDLLYTGLILQILTRLAQKTNLPLLRHILLLPLTSILTSTLIYYPKESIPV AEYQARPLADHPDVKYGRPPGALRVPREPLDATTVAEAVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWHSVYCVTKRDAFRGGAPINLTD RLHQVLRWATGSVEIFFSRNNAFLASRNLLFLQRLFYLNVGIYPFTSIFLIVYCFLPALSLFSGSFIVESVTITFLVYLLIMTFCLIGLAILEVKWSGIA LEEWWRNEQFWLISGTSAHLAAVVQGLLKVIAGIEISFTLTSKAAGDDNEDLYAELHLVKWTSLMMPPIVIAMTNIIAMAWAFVRTVYSTTPSWSKLVGG WFFSFWVLAHLYPFAKGLMGRRGKTPTIVYVWSGLITITISLLWIAISPPTAATEPGQPGGTQTGFQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	1.4	0.8026
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10000060 [exp]	4.2	0.7638
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	7.1	0.7666
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	8.4	0.7500
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	11.8	0.7720
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10003506 [exp]	15.5	0.7366
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	16.6	0.7465
AT5G59400			unknown protein		Lus10016531 [exp]	16.8	0.7839
AT3G01270			Pectate lyase family protein (...		Lus10036721 [exp]	20.3	0.7290
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	20.6	0.7881

Compare expression of checked genes

Lus10001619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.