Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38200 2161 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 2025 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 1402 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 1377 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 702 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G13980 223 / 2e-58 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 216 / 3e-56 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 188 / 1e-47 GNL2 GNOM-like 2 (.1) AT5G27970 71 / 1e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022983 [exp] 3241 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009300 [exp] 1461 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 1071 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 1051 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 682 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 652 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10036789 [exp] 270 / 6e-73 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 228 / 4e-60 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 226 / 3e-59 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169800 [exp] 2465 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 2453 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 1488 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 1469 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 702 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 224 / 8e-59 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 194 / 1e-49 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.017G078800 [exp] 190 / 2e-48 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.013G035100 [exp] 59 / 5e-08 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10001620 pacid=23175428 polypeptide=Lus10001620 locus=Lus10001620.g ID=Lus10001620.BGIv1.0 annot-version=v1.0 ATGTCAGCTCCTGTAGCCCTTGGAGGTTCTTCCCGCTGCGGCCGTGTCCTAGGCCCGTCGCTGGACAAGATCATTAAGAATGCAGCATGGCGGAAGCACT CCCACCTCGTCACCTCCTGCAAATCCGCCCTCGACAAGCTCCAATCTCTCTCCGACCTCCCTAATCACGACCCTGACTCCCCGCTCTTCTGCATCCCCGC TGCCGATTCACCTCTCCTTCTCCAGCCCATCCTCCTCGCCTTGGACTCCAACCACTCCAAGGTCGCCGAGCCAGCACTAGAATGCGCTTACAAGCTTTTC TCCCTCTCCCTCATACGCGGCGAGGCCGATCCTGCCTCCATTTCCCCTTCTCTCATTCTCAGGCTCCTCGACGCCGTTTGTCGGTCCTGCTCTATTGGAG ACGAGGTTCTCGAGCTCTCTGTCCTTCGTGCACTCCTCGCCGCCGTCAGATCCCCTTGCCTTTCCATTAGCGGCGAGGGATTGGCCAGTATCATTAAGAC CTGCTACAACGTTTACCTAGGCGGCACCAATGGCACCAATCAGATCTGTGCTAAGTCCGTTCTTGCTCAAATTGTCCTCATTGTTTTCACCAGAGTCGAG GAAGATTCAATGGATGTTGTTCTTAGAACTGTCTCCGTTGGCGAATTGCTCGAGTTCACTGACAAGAATCTCAATGAAGGGAGTTCTATTCATTTTTGCC AGAACTTCATCAATGAGGTTATGTCTGCGGCTGCTGCTGAAGACATTCATCTCCCCGTACATGTTCCTTCACCTGATGTGAAGCAGGAAAATGGTGGTGC AACTGATGGATCTGCAGCTGGTGATGATGTGGCCAAAGTGGCGGATGACAAAGGTGAATCCGATAATGGAGCTCAGCCTCAGCCTGTTGGTGCCGATACT GATGCTGCGGGTGCTGAAGCTACTGGGGATAGTAAAATTAGGGAGGATGGCTTTCTCCTTTTTAGGAATCTTTGCAAGTTATCTATGAAGTTTTCCTCCC AAGAGAATCCAGATGATCATATTCTGCTGAGAGGCAAGACATTGTCACTGGAGTTGATCAAAGTTATAATGAACACTGGTGGTCCATTGCTGCGAAACAA TGAGAGGCAAAACAGTGCATTGTCAGTCATGGCTGTTTTCCAGCTTCAGTGCTCTATTTTTATAATATTGTTGTCAAAATTCAGATCTGGATTGAAAGAA GAAATTGGGATATTCTTCCCAATGCTCATTCTCCGAGTGCTTGAGAATGTTAACCAGCCTAGTTTCTTACAGAAAATGACCGTGCTAAATTTCCTGGAGA AGATTTTCTTGGATCCGCAGCTTATAATTGATCTTTTTGTCAACTATGACTGTGATGTGGAGTCTCCCAACTTATATGAAAGGACTGTCAACGGCCTTCT GAAAACTGCTCTAGGACCACCACCTGGTTCAACCACAACATTATCTGCAGCTCAGGACATTACTTTTAGGCATGAATCTGTGAAGTGTTTGGTTATCATT ATCAAGTCCATGGGTACATGGATGGACCAGCAGCTCAGAATAGAGGAAGCCTATTTGCCTAAAAGCACAGAGATTTATACTTCAATCGAGAATTATTCAA ACCCTAGTGGAGAAGATGGTAGTATCCCAGACTATGATTTACATACAGAAGTTACCTCTGAAACTTCAGATGCTGCTACTCTAGAACAGCGACGGGCTTA TAAAATGGAACTCCAGAAAGGTATCTCTCTATTTAATAGGAAACCATCAAAGGGTATCGAGTTTCTGATAAACAGTAAAAAAATTGGTGATTCTGCCGAA GAAGTTGCTGCATTCCTTAAAAACACCAGTGGCTTGAATGAGATAGTGATTGGAGACTATTTGGGTGAAAGGGATGAATTCTGTTTGAAGGCAATGGGTT TTGGTGAATCTATAAGATATTTCTTAAGGGGCTTCAGGTTACCTGGCGAAGCACAGAAGATTGACCGCATCATGGAAAAGTTTGCTGAGCGCTATTGTAA ATGCAATCCGAACTCATTTACCAGTGCAGATACAGCGTACGTCCTTGCTTATTCCGTCATAATGCTTAATACAGATGCACATAACAACATGGTGAAAGAT AAGATGTCAAAAGCTGATTTCATACGAAACAACCGAGGAATAGATGATGGAAAAGATTTACCTGAAGAATACTTGAGCACCATCTACGATCAAATTGTTA AAAATGAAATTAAGATCAAGGCTGATTCTGTGCCTCAAGCTAAGCAGGAAAATAGTTTGAATAAGCTTTTAGGTTTAGATGGGATACTCAATCTAGTAAC ATGGAAGCAGGCTGAAGAAAAGCCACTGGGTGCAAATGGGCTTCTAATTCGGCATATCCAAGAACAGTTCAGGGCAAAGTCAGGCAAAGCAGAGTCAGTC TATCATGTCGTAACAGATGCTGCGATTTTGAGGTTTATGGCTGAGGTCTGCTGGGGTCCTATGTTGGCTGCATTCAGTATGACCCTTGGTCAAAGTGATG ATAAGCTTGCTACTTCTCAGTGCTTACAAGGATTTAGATACGCTGTGCATGTTACGGCAGTAATGGGAATGCAGACTCAGAGAGATGCTTTTGTCACATC CATTGCAAAGTTTACTTATCTTCATTGTGCTGCAGATATGAGGCAGAAGAACGTTGATGCAGTGAAGGCAATTATAGCGATTGCTATTGAAGATGGTAAT CACCTTCAAGAGTCTTGGGAGCATATTTTAACATGCCTTTCTCGGATTGAGCATCTGCAGCTGCTGGGGGAGGGTGCACCACCTGATGCATCTTTCTTGA CTGGTTCAAATAATGACCCAGATGAAAAAGCTTTAAAGTCCATGGGTAGTTACCCATCTCTAAAAAGAAAAGGAAGTCTACAGAATCCAGCTGTAATGGC TGTTGTCAGAGGCAGTTCATATGATAGCACTGGACTTGGATTGAACACCCTGGGACCTGTGACCCCAGAGCAGATTAATAGCTTCATTTCAAATTTGAAT TTGCTTGATCAGATTGGGCACTTTGAACTGAACCACGTATTTGCTAATAGCCAAATGCTGAACAGTGAGGCTATAGTGGCTTTTGTAAGAGCTTTATGCA AGGTCGCAATATCAGAGCTGCAGTCCCCAACTGATCCTCGTGTATTCAGCCTAACAAAGATTGTTGAAATAGCGCACTACAATATGAACCGCATCAGACT AGTCTGGTCCCGTATATGGAATGTTCTATCAGATTTCTTCGTTTCAGTTGGCTTGTTTGAAAATCTCTCAGTTGCTATATTTGTGATGGATTCACTGCGA CAACTTGCTATGAAGTTCCTGGAACGGGAGGAGTTGGCAAATTACAACTTCCAGAACGAGTTTCTTAGACCTTTTGTGATTGTTATGCAGAAAAGTGGAT CCACAGAAATTAGAGAATTGATTGTTCGCTGTATCTCGCAGATGGTTCTTACTCGTGTCAATCATGTGAAATCTGGCTGGAAAAGTGTATTTATGGTTTT TACAGCTGCTGCTGCTGACGAACGGAAAAATGTTGTCCTGTTGGCCTTTGAAACAATGGAGAAGATAGTGCGGGAATATTTTCCTTATATAACTGAAACA GAAACGACAACATTCACTGATTGTGTTAGATGCCTGACTACCTTCACAAACAGCAGGTTTAATAGTGATGTGAGCTTAAATGCCATTGCATTTCTCCGTT ACTGTGCTGTTAAACTTGCAGAAGGAGGCCTCACTTGCAATGAGGTGAAAAAGGTTGATGATTCATCCAAGCCGGTGATGAACGAGGACACTTCAGATGT GCAAAATGTTCATGACAAGGATGATCATGCATCATTTTGGTTTCCTTTGCTCACAGGGTTGTCACGGTTGACCTCTGATCCTAGATCAGCAATTAGAAAG AGTGCCTTGGAAGTTCTGTTCAACATTCTCAGTGATCATGGCCATCTCTTCTCACGTGTGGTTTGGATGGACATTTTCACGTCCGTTGTCTTCCCCATTT TCAATGGATTATGTGATAGAAGAGATATTGATAGCAAAGGTGACCAAGATTCGGCAACTCCTGCACATCTTGAAGGAGGTTCATGGGATTCTGATACATC TTCTTTAGCATCACAGTGTCTGGTCGATCTGTTTGTCCGCTATTTTGACGTGGTGAGGTCTCAACTGCATCATTTGATGGCAATTCTGACTGGGTTCATT AGAAGTCCTGTCCATGGTCCTGCTAGTACCGGTGTTTCTGCATTGCTGCGGTTAGCAGGTGAACTGGGAAGTAGGCTGTCTGATGATGAGTGGGCACAGA TATTTGTAGCTCTGAAAGAAGCTGCTGCTTTAACAATGCCGGGTTTTATGAAAGTCTTCAGAAGCTTGGATGACATAGAGATGGCCATTGACCCCCAGTC TTATGCTGATATTGATGTGGCTTCTGATCCTGGCTTTACTCAGGGTGACATTGAAGAGGACAGGCTCCAAACTGCAGCATATGTGGCTTCCAGAGTAAAG AGTCACATTGCTATCCAGCTACTCATCACACAGGTTGCCATTGATCTATACAGAACACACCTAAAGTACCTGTCCGAATCCAATATCAGTATCATCATTG AGATGTTCCGAACGGTTGCATCCCATGCCCGCGATCTCAACTGCGAGACATTCCGATTGAAGAAACTTCAGAGAGCATGCTCTATACTAGAGATCTCAGA TCCTCCAATGGTACACTTTGAAAACGAGTCTTACCAGAATTACCTGAGCTTGCTCCAGGACTTGATTGTCGATAAACCATGGGCATGCAAGGATATAAAC GTAGATTCACGACTGGTGGAGGTATGCGTCGAGATTCTGCAGATATATCTAAAGTGCACAGCACGTCCTCCCTCCAGGACCCTCAACAGGCCGGTGACCA GATCGGTGCTCCCTTTAGGCGCTGCAAAGAAGGAAGAACTGGTGGCGAGGACTTCATTGCTCGTTTCGGCGCTACAAGGGTTAAGTGGACTGGATCGTGA GAGTTTTGGGAAACACGTAATGGAGTTCTTTCAGCTGTTGGTAGATCTGGTGAAGAGTGAGCATAGTTCAGGAGAAGTTCAGAGGGCGTTGAGTAACATT TTCGCGTCATGTATAGGGCCGATAGTAATGTAA
AA sequence Show only first row Show all	>Lus10001620 pacid=23175428 polypeptide=Lus10001620 locus=Lus10001620.g ID=Lus10001620.BGIv1.0 annot-version=v1.0 MSAPVALGGSSRCGRVLGPSLDKIIKNAAWRKHSHLVTSCKSALDKLQSLSDLPNHDPDSPLFCIPAADSPLLLQPILLALDSNHSKVAEPALECAYKLF SLSLIRGEADPASISPSLILRLLDAVCRSCSIGDEVLELSVLRALLAAVRSPCLSISGEGLASIIKTCYNVYLGGTNGTNQICAKSVLAQIVLIVFTRVE EDSMDVVLRTVSVGELLEFTDKNLNEGSSIHFCQNFINEVMSAAAAEDIHLPVHVPSPDVKQENGGATDGSAAGDDVAKVADDKGESDNGAQPQPVGADT DAAGAEATGDSKIREDGFLLFRNLCKLSMKFSSQENPDDHILLRGKTLSLELIKVIMNTGGPLLRNNERQNSALSVMAVFQLQCSIFIILLSKFRSGLKE EIGIFFPMLILRVLENVNQPSFLQKMTVLNFLEKIFLDPQLIIDLFVNYDCDVESPNLYERTVNGLLKTALGPPPGSTTTLSAAQDITFRHESVKCLVII IKSMGTWMDQQLRIEEAYLPKSTEIYTSIENYSNPSGEDGSIPDYDLHTEVTSETSDAATLEQRRAYKMELQKGISLFNRKPSKGIEFLINSKKIGDSAE EVAAFLKNTSGLNEIVIGDYLGERDEFCLKAMGFGESIRYFLRGFRLPGEAQKIDRIMEKFAERYCKCNPNSFTSADTAYVLAYSVIMLNTDAHNNMVKD KMSKADFIRNNRGIDDGKDLPEEYLSTIYDQIVKNEIKIKADSVPQAKQENSLNKLLGLDGILNLVTWKQAEEKPLGANGLLIRHIQEQFRAKSGKAESV YHVVTDAAILRFMAEVCWGPMLAAFSMTLGQSDDKLATSQCLQGFRYAVHVTAVMGMQTQRDAFVTSIAKFTYLHCAADMRQKNVDAVKAIIAIAIEDGN HLQESWEHILTCLSRIEHLQLLGEGAPPDASFLTGSNNDPDEKALKSMGSYPSLKRKGSLQNPAVMAVVRGSSYDSTGLGLNTLGPVTPEQINSFISNLN LLDQIGHFELNHVFANSQMLNSEAIVAFVRALCKVAISELQSPTDPRVFSLTKIVEIAHYNMNRIRLVWSRIWNVLSDFFVSVGLFENLSVAIFVMDSLR QLAMKFLEREELANYNFQNEFLRPFVIVMQKSGSTEIRELIVRCISQMVLTRVNHVKSGWKSVFMVFTAAAADERKNVVLLAFETMEKIVREYFPYITET ETTTFTDCVRCLTTFTNSRFNSDVSLNAIAFLRYCAVKLAEGGLTCNEVKKVDDSSKPVMNEDTSDVQNVHDKDDHASFWFPLLTGLSRLTSDPRSAIRK SALEVLFNILSDHGHLFSRVVWMDIFTSVVFPIFNGLCDRRDIDSKGDQDSATPAHLEGGSWDSDTSSLASQCLVDLFVRYFDVVRSQLHHLMAILTGFI RSPVHGPASTGVSALLRLAGELGSRLSDDEWAQIFVALKEAAALTMPGFMKVFRSLDDIEMAIDPQSYADIDVASDPGFTQGDIEEDRLQTAAYVASRVK SHIAIQLLITQVAIDLYRTHLKYLSESNISIIIEMFRTVASHARDLNCETFRLKKLQRACSILEISDPPMVHFENESYQNYLSLLQDLIVDKPWACKDIN VDSRLVEVCVEILQIYLKCTARPPSRTLNRPVTRSVLPLGAAKKEELVARTSLLVSALQGLSGLDRESFGKHVMEFFQLLVDLVKSEHSSGEVQRALSNI FASCIGPIVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	1.0	0.9701
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	2.0	0.9600
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	2.2	0.9395
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	4.1	0.9133
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	4.2	0.9365
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	5.5	0.9483
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	5.6	0.9019
					Lus10019050 [exp]	6.0	0.8979
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	7.3	0.9292
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	8.1	0.9177

Compare expression of checked genes

Lus10001620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.