Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35320 102 / 1e-28 unknown protein AT2G17300 72 / 9e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022985 [exp] 217 / 3e-73 AT4G35320 105 / 3e-29 unknown protein Lus10026561 [exp] 165 / 4e-53 AT4G35320 117 / 2e-34 unknown protein Lus10013844 [exp] 121 / 2e-36 AT4G35320 91 / 5e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207500 [exp] 154 / 9e-49 AT4G35320 110 / 1e-31 unknown protein Potri.009G168800 [exp] 143 / 2e-44 AT4G35320 113 / 1e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001621 pacid=23175430 polypeptide=Lus10001621 locus=Lus10001621.g ID=Lus10001621.BGIv1.0 annot-version=v1.0 ATGAGCTCAATCCTCCACAAGAGCCGCTCCGCCGCCGCACTCCCGGTCTCCCAACCTGAAGGCGGCAGCGGAGAACAGGGAGGCGTACTCCGGAGGAGAC TCTCTTCACTATCCCTAAACATCCAGCCAATCGCCTCCCCTGCAACGACTTGGGCCATCCACAGATCCAAGTCGCTGTCGGCCATGGGCCAACACGCCGG CGACTCCATCAAGACCTGGTGGGGTTGGGGTCTGGCTTGGATCTTGTCCAAGAAGCCTGTCTTCGCTCAAGATCTGGAGATGAACGAGGAGGAGGCCAAG GCCTTGGGCTCCCAGAACAGAGGCAGCTGGTTCCACATCCTCTACAAGCTCAAGTCCGAGATCACCAAAGCAGTCCTCACTAGATCTGATAAAGCAGCTG GCCTCCCACAGACTTACAGGTACACCAATTCCCCCTATCATCAGTAA
AA sequence Show only first row Show all	>Lus10001621 pacid=23175430 polypeptide=Lus10001621 locus=Lus10001621.g ID=Lus10001621.BGIv1.0 annot-version=v1.0 MSSILHKSRSAAALPVSQPEGGSGEQGGVLRRRLSSLSLNIQPIASPATTWAIHRSKSLSAMGQHAGDSIKTWWGWGLAWILSKKPVFAQDLEMNEEEAK ALGSQNRGSWFHILYKLKSEITKAVLTRSDKAAGLPQTYRYTNSPYHQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35320			unknown protein		Lus10001621 [exp]	0	1
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	1.4	0.9265
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	1.4	0.9315
AT4G35320			unknown protein		Lus10022985 [exp]	2.8	0.9011
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	3.2	0.9003
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	3.5	0.8767
AT3G49720			unknown protein		Lus10007228 [exp]	4.2	0.9030
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	4.7	0.8633
					Lus10042355 [exp]	6.9	0.8746
AT1G45688			unknown protein		Lus10010232 [exp]	7.1	0.8694
AT3G49720			unknown protein		Lus10039648 [exp]	7.2	0.8560

Compare expression of checked genes

Lus10001621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.