Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18980 295 / 3e-99 Peroxidase superfamily protein (.1) AT4G30170 294 / 1e-98 Peroxidase family protein (.1) AT4G37530 261 / 6e-86 Peroxidase superfamily protein (.1.2) AT5G67400 258 / 2e-84 RHS19 root hair specific 19 (.1) AT4G37520 253 / 1e-82 Peroxidase superfamily protein (.1.2) AT3G49960 253 / 2e-82 Peroxidase superfamily protein (.1) AT5G14130 193 / 3e-59 Peroxidase superfamily protein (.1) AT5G40150 157 / 2e-45 Peroxidase superfamily protein (.1) AT4G17690 154 / 2e-44 Peroxidase superfamily protein (.1) AT5G42180 146 / 3e-41 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001442 [exp] 397 / 3e-139 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10011079 [exp] 276 / 2e-91 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10032035 [exp] 224 / 2e-71 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10012540 [exp] 215 / 1e-67 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10035204 [exp] 189 / 3e-58 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10039445 [exp] 154 / 5e-44 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10010716 [exp] 150 / 9e-43 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10017288 [exp] 150 / 2e-42 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10005614 [exp] 148 / 5e-42 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089900 [exp] 334 / 2e-114 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G053400 [exp] 269 / 1e-88 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.017G064100 [exp] 243 / 1e-78 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 243 / 2e-78 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G074700 [exp] 179 / 1e-53 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 162 / 2e-47 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 156 / 5e-45 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 155 / 2e-44 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 150 / 8e-43 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 149 / 2e-42 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10001622 pacid=23145987 polypeptide=Lus10001622 locus=Lus10001622.g ID=Lus10001622.BGIv1.0 annot-version=v1.0 ATGCCTATCAGTTGTCTGGCTTATCAAATGAATCCCAGACACCAATTGAACAATCCAACTAACATCAATTCACAAAAGTACCACACTTCGAATAGAGATC CGTACCTGAATCGACAACAAAGCGGGACGAAGAGATCAGTGGCCGCCGTGCTCTTTGGCGTGCTGCTGGTGCTCCAGATGGCGACGCTCCTCGGGAAGGG CAACGAGATAGGAGAATGCCATCCCGCCAAAACAGACATGGAGGAGCGGGTCGACGGAGCTGGTCAGGATGTACTTGGCGTGGGATGTGATGCTTCTGTG CTCCTTGCACCCCCCACCAACAATGCGGAGAAGGATCACCCGGACGACATATCGCTAGCCGGCGACGGATTTGACACTGTCATCAAGGCCAAGGTGGCCA TTGACCGTGTCCCTCGCTGTCGCAACAAGGTCTCTTGCACTGATATCCTTGCTCTCGCCACCTGCGAAGTTGTCTCCCTGGGGGGGCCGTTCTACAGAGT GGAGCTAGGTAGAAGAGACGGACGAGTATCAACAAAAGCAAGCGTCGAACGCCAACTCCCACACGCAAACTTCAACTTGAATCAGCTCAACCAAATGTTC GCCGCACGTTCACTCTCCCAAACAGACATGATCGCACTCTCCGGAGCACACACTTTAGGCTTCTCCCACTGCAACCAATTCTCAAACCGGATATATGGAT TCAGCTCGAGAAACCGAATTGACCCGACCCTCAACTTCCAGTATGCACTGCAGCTCAGGCAGATGTGCCCCATCCGGGTCGACCCGAGGATCGCGATCAA CATGGACCCCACGTCTCCTCAGCGGTTTCGACAATGCATACTACGGGAACTTGCAACAGGGGAAGGGTCGAGACCGACTGTGAACCGGTTTGCGGCCAGC AATGCTGCTTTCAGGCAGGCGTTTGCTGCCGCTGTCACGAAGTTAGGGCGCGTTGGTGTGCTCACCGGATCTCGTGGCGAGATCCGGTGA
AA sequence Show only first row Show all	>Lus10001622 pacid=23145987 polypeptide=Lus10001622 locus=Lus10001622.g ID=Lus10001622.BGIv1.0 annot-version=v1.0 MPISCLAYQMNPRHQLNNPTNINSQKYHTSNRDPYLNRQQSGTKRSVAAVLFGVLLVLQMATLLGKGNEIGECHPAKTDMEERVDGAGQDVLGVGCDASV LLAPPTNNAEKDHPDDISLAGDGFDTVIKAKVAIDRVPRCRNKVSCTDILALATCEVVSLGGPFYRVELGRRDGRVSTKASVERQLPHANFNLNQLNQMF AARSLSQTDMIALSGAHTLGFSHCNQFSNRIYGFSSRNRIDPTLNFQYALQLRQMCPIRVDPRIAINMDPTSPQRFRQCILRELATGEGSRPTVNRFAAS NAAFRQAFAAAVTKLGRVGVLTGSRGEIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	0	1
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	3.3	0.8454
					Lus10002271 [exp]	4.7	0.7464
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	5.3	0.8242
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	5.9	0.7840
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	6.9	0.8150
					Lus10001343 [exp]	7.5	0.7998
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	9.5	0.7663
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	12.5	0.7381
AT5G01740			Nuclear transport factor 2 (NT...		Lus10001261 [exp]	13.0	0.7304
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	13.4	0.7481

Compare expression of checked genes

Lus10001622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.