Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11710 886 / 0 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT3G13490 332 / 9e-106 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G30805 94 / 3e-22 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G26870 86 / 3e-17 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 82 / 2e-16 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G33760 72 / 6e-13 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001440 [exp] 1156 / 0 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10013408 [exp] 319 / 5e-101 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 300 / 2e-93 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10037243 [exp] 64 / 3e-10 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10035657 [exp] 48 / 2e-05 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166000 [exp] 938 / 0 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090400 [exp] 934 / 0 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 924 / 0 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.003G221600 [exp] 332 / 3e-106 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.006G085400 [exp] 86 / 2e-17 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.009G084300 [exp] 69 / 5e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 69 / 6e-12 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10001625 pacid=23145980 polypeptide=Lus10001625 locus=Lus10001625.g ID=Lus10001625.BGIv1.0 annot-version=v1.0 ATGGAGAGCACGGTCGATGAAGCAGCTCAGGCCGTCTCCGATCTTCAAGTCAATCCTGAAGAAACCACTAGCAAAAATGCGCGCAAGAAGGAGCTGAAGA ACAAGCAGCGAGAAGAAGAGAGGAAGCGCAAGGAGGAAGAGCGAGCTAAGCATGCTGCTTCAAAGGCTGCTACTTCTCAAGCTCAAAAGCCTGCTGCAGA TGATGACGACATGGATCCTACGCAATACTTTGAGAATCGAGTCAAGTATCTCGACGGACTGAAGGGTGAAGGGAAGAATCCTTACCCTCACAAGTTCGTT GTCACCATGACGATTGCTGATTATGCTAAAAAGTTCGGAGGCTTAAGCAATGGAGAGCATGTTGAAGATGTTACTGTATCTTTGGCTGGACGGATAATGA GTAAGCGCTCATCTTCTTCGAAGCTCTTCTTCTATGATCTGCATGGTGGCGACTCAAAAGTTCAAGTTATGGCTGATGCTAGCAAGTCTGACTTGAAGGA AGACTTCGTAAGGCACCATTCTACTGTGAAGCGTGGTGATATCGTTGGAGTGACTGGATTTCCAGGGAAGACAAAAAGAGGGGAGTTAAGCATTTTCCCT ACAAGATTTGAGGTCTTATCTCATTGTCTTCACATGTTGGCCCGTCAGAAAGCTTCTGACATTGCTGCTGCGCAGAAAGTTGAACCATGGAAAACTGGAT TAACTAGGAATCCGGAAACATATATTTTGAAGGATCAGGAAACAAGGTATCGACAGCGATATCTGGATCTCATGCTGAATCCCGAGGTGCGACAAATATT CAGGACTAGATCAAAGATCATTAAATATGTCAAAAGCTTCCTTGATGACCGCGATTTTCTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGT GCAGCTGCACGCCCTTTTGTGACTCATCATAATGATTTGAACATGAGGCTTTTTATGAGAATAGCCCCCGAGCTATATCTTAAAGAGCTTGTTGTTGGTG GATATGACCGAGTTTACGAGATTGGTAAACAGTTCAGAAATGAGGGCATTGACTTAACACACAACCCTGAATTCACGACCTGTGAATTTTACATGGCTTA CGCTGATTATCATGATCTCATGGTGCTTACTGAGCAGATGATGAGTGGAATGGTCAAGGAGCTTACCGGTGGCAGCTACAAAATTAAGTATCATGCTAAT GGGTATGATAAAGAGCCAATAGAAATTGACTTCACGCCTCCTTTCAGGAGGATTGAGATGATAGCAGGGTTGGAGGAAATGGCTAACCTTAAAATTCCAA AGGATATTGCTAGCGAGGAAGCTAACAAGTATCTGGTAGCTGCATGCGAGAGATTTGAAGTCAAGTGTCCCCCTCCCCTAACTACAGCTCGTCTGCTGGA CAAACTCGTGGGACACTTCCTTGAAGAAACCTGCACAAACCCTACCTTCATTATCGATCATCCTGAAATAATGAGTCCTCTGGCAAAGTGGCATCGATCG AAACCAGGCTTGACTGAGCGTTTTGAATTGTTTATCAACAAACATGAACTTTGCAATGCTTACACGGAACTGAACGATCCAGTGGTGCAGCGACAACGAT TTGCTGATCAACTCAAGGATCGACAGTCAGGTGATGATGAAGCAATGGCTCTAGACGAAACTTTCTGCACAAGTCTCGAGCATGGTCTTCCTCCAACCGC CGGATGGGGCTTGGGTATCGACCGGCTGACTATGCTTTTAACCGATTCACCCAACATCAAGGAAGTACTTCTCTTCCCTGCTATGAAGCCACAAGATGAA CCTCCCACTAAAGCAGCTGCATCAGCATCAACATCATCTTAA
AA sequence Show only first row Show all	>Lus10001625 pacid=23145980 polypeptide=Lus10001625 locus=Lus10001625.g ID=Lus10001625.BGIv1.0 annot-version=v1.0 MESTVDEAAQAVSDLQVNPEETTSKNARKKELKNKQREEERKRKEEERAKHAASKAATSQAQKPAADDDDMDPTQYFENRVKYLDGLKGEGKNPYPHKFV VTMTIADYAKKFGGLSNGEHVEDVTVSLAGRIMSKRSSSSKLFFYDLHGGDSKVQVMADASKSDLKEDFVRHHSTVKRGDIVGVTGFPGKTKRGELSIFP TRFEVLSHCLHMLARQKASDIAAAQKVEPWKTGLTRNPETYILKDQETRYRQRYLDLMLNPEVRQIFRTRSKIIKYVKSFLDDRDFLEVETPMMNMIAGG AAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGYDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMVLTEQMMSGMVKELTGGSYKIKYHAN GYDKEPIEIDFTPPFRRIEMIAGLEEMANLKIPKDIASEEANKYLVAACERFEVKCPPPLTTARLLDKLVGHFLEETCTNPTFIIDHPEIMSPLAKWHRS KPGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTSLEHGLPPTAGWGLGIDRLTMLLTDSPNIKEVLLFPAMKPQDE PPTKAAASASTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	2.0	0.8940
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	2.4	0.8676
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10005192 [exp]	4.9	0.8556
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	6.5	0.8382
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	7.5	0.8221
AT2G40700			P-loop containing nucleoside t...		Lus10030523 [exp]	7.9	0.8572
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	8.4	0.8138
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	11.0	0.8128
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	15.4	0.8297
AT1G42430			unknown protein		Lus10034575 [exp]	17.7	0.7538

Compare expression of checked genes

Lus10001625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.