Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59050 55 / 2e-08 unknown protein AT4G02830 52 / 9e-08 unknown protein AT3G54000 48 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001433 [exp] 245 / 1e-79 AT5G59050 80 / 9e-17 unknown protein Lus10021105 [exp] 58 / 3e-09 AT3G54000 90 / 8e-20 unknown protein Lus10042573 [exp] 50 / 5e-07 AT4G02830 66 / 2e-13 unknown protein Lus10016465 [exp] 49 / 2e-06 AT3G54000 56 / 8e-09 unknown protein Lus10040247 [exp] 42 / 0.0003 AT2G39870 100 / 9e-24 unknown protein Lus10014664 [exp] 41 / 0.0004 AT4G02830 74 / 2e-16 unknown protein Lus10004675 [exp] 42 / 0.0006 AT2G39870 100 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038600 [exp] 81 / 5e-17 AT5G59050 112 / 3e-28 unknown protein Potri.010G195800 [exp] 64 / 2e-11 AT3G54000 94 / 3e-21 unknown protein Potri.006G093000 [exp] 61 / 4e-10 AT3G54000 79 / 9e-16 unknown protein Potri.016G105000 [exp] 56 / 9e-09 AT3G54000 73 / 4e-14 unknown protein Potri.002G053700 [exp] 51 / 1e-07 AT4G02830 99 / 4e-26 unknown protein Potri.005G208800 [exp] 49 / 1e-06 AT4G02830 99 / 4e-26 unknown protein Potri.008G062200 [exp] 46 / 2e-05 AT2G39870 90 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001626 pacid=23145983 polypeptide=Lus10001626 locus=Lus10001626.g ID=Lus10001626.BGIv1.0 annot-version=v1.0 ATGGCGACTGACCTCCAATTCCAAAACTCTTCCTCTTCCACTCCAGATTCATTATTCAGTACCCAGCAGAATATTCACTGGTTTATTGACGATGACCAAC AACCCAACTGCTCACTTTCCCCTTACTCTTCCTCCTCCTCGACTTCCCTCTGTTCTGTTCTCGACTCAACAGAGTCGTCGACGACCGAGGAGGAGGAATC CGATGAGTACATCGCCGAGTTGACTCGCCAGATGGCTCACTCCATGCTCCAGGATTTTGATGATGATAATGATGATGTTGGATTCGTTGACAGTCCTGTT TCAGAGCTTCACAAGAAGCAAGCTTTAATTGATGAGCAAATCCGCTTTGTTCAGGCGCAGAGGGAGAAACGAGAAGGCACGGTGAAGGAGGAAGAAGAAG GAATCAAACCGTTGCCGGCGCAGCAAGGGAGGAAAAAACGAGGCAAGAAGAAGGGACAGAAGGCTCCGCCGAAGGTGATGAGTGCGGTGTTTCTAGGAGT TCCAGCTGGTAGAGCTGCTTCAGGCACCGGCGTCTTCTTGCCGGCGACGACGGGAGGAGTGGACAACAGAAGTACTAGTAGTATTACTAATGCTACTTCC TCCCCTGAATCACGCAGCAAATCAGGATGTTCAACGGTTTTGATGCCAGGAAGAGTAGTTCAGGCTCTGAAACTACACTTCGACAAAATGGGGCCATTTC CGTCGCCGGTAAATCCTCCGGCCGCCGCCGTGGTGGCTTCCAGTATGCATTTCCAGCTAGGCGCACTGACGGGTAACGTGAGGTACGCCTTCCAATTACA GCAGAGAAGTACTGAATCATCATCGCCGCCGTCGACAAAGCCGTCCAAGAATCTTAACCGACGTCGTTTTCAAGAGATGGGTCTACCGCAAGAGTGGACG TATTAA
AA sequence Show only first row Show all	>Lus10001626 pacid=23145983 polypeptide=Lus10001626 locus=Lus10001626.g ID=Lus10001626.BGIv1.0 annot-version=v1.0 MATDLQFQNSSSSTPDSLFSTQQNIHWFIDDDQQPNCSLSPYSSSSSTSLCSVLDSTESSTTEEEESDEYIAELTRQMAHSMLQDFDDDNDDVGFVDSPV SELHKKQALIDEQIRFVQAQREKREGTVKEEEEGIKPLPAQQGRKKRGKKKGQKAPPKVMSAVFLGVPAGRAASGTGVFLPATTGGVDNRSTSSITNATS SPESRSKSGCSTVLMPGRVVQALKLHFDKMGPFPSPVNPPAAAVVASSMHFQLGALTGNVRYAFQLQQRSTESSSPPSTKPSKNLNRRRFQEMGLPQEWT Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59050			unknown protein		Lus10001626 [exp]	0	1
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	2.0	0.9277
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	5.1	0.8979
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	5.1	0.8583
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	6.9	0.8811
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	7.2	0.8909
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	8.3	0.8932
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	8.9	0.8243
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	11.2	0.8136
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	14.0	0.8786
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	15.9	0.8499

Compare expression of checked genes

Lus10001626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.