Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57120 115 / 3e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001434 [exp] 478 / 4e-170 AT5G57120 116 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140200 [exp] 184 / 6e-54 AT5G57120 97 / 3e-22 unknown protein Potri.006G073100 [exp] 183 / 1e-53 AT5G57120 102 / 7e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05022 [flax] [poplar] SRP40_C SRP40, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001627 pacid=23145988 polypeptide=Lus10001627 locus=Lus10001627.g ID=Lus10001627.BGIv1.0 annot-version=v1.0 ATGCCATCCGCCGCCGTCAAGACCCCGTCGGCTCCGAAACCCGACCCGAAAACACTTCTCCTCCACTCCATTGCTCTCTACCTTCAACGCTCCGGCTACT CCAAAACGTTCAAGAAGCTCCGATCGGAATCCGATCTCCAGTTATTCCATTTATCCAGCAGTGATCAGGGCAGCAAGAAACCTGAGACCATCATTTCCAA GGAGAAAGCAGTTTCAGCTGAAGCAGAGAAGCCTGCAGAAAATGGTACAGAGATCAAGGGTAAGGAATCTGGCGCTAGTTTTGAGTTTGTTGCTACAGCT GAGCCTGAAAAGGATAAGAAGTCAAAGAAGAAAAAGTCAAAGAAACTTGCTTTGGATAATGCTGAGTCTGTATCTGAAGACAAGAAGAAGATGGATGTGG ACAACGACGTTGCGGAGAAGAAAGTTAAGAAACAAAAGAAGAAATCTCAAAACTTGATCAGTACAACTGCTGAGGAGGATGCTTTGAAGGTTTCAGAGAC AACAGTTGATGATACTGAAACACAAGACAAGGAGTCTAAGAAACGTAAAAGGTCGTCTCCTCAAGAAATTGCCACTGAGCCTACTGAAGACGAGAAACCA ATTGAAAAATCCAAACGTCAGAAGACAGAAGCTGCTGAGACCCAAACACAAGAAAGCAATGGCCAAGTTATTGAAGATGATGTGCTAGCCAGTGAGAAAA AGGAACAGAAAGCCAAGAAATCCACCAAAAAGCAGCAAAACAGTTCATCTGAGCCAACAACAGCGCAGCGTTTCCAGAGAGTAAAAGCTGACGAGGTGGT GTTCTCTGATGAAAGGCTTAAAGATAATTCATACTGGGCAAAGGATGGTGCTGAAAGTGGATATGGTGCCAAAGCACAAGAAGTTCTTGGCCAAGTGAAA GGAAAGGGATTCAGGCACGAAAAGACGAAGAAGAAGCGAGGAAGCTACAGAGGAGGCCAAATTGATCTGCACACCCACTCAGTCAAGTTCAATTACTCAG ATGAGGAGTAA
AA sequence Show only first row Show all	>Lus10001627 pacid=23145988 polypeptide=Lus10001627 locus=Lus10001627.g ID=Lus10001627.BGIv1.0 annot-version=v1.0 MPSAAVKTPSAPKPDPKTLLLHSIALYLQRSGYSKTFKKLRSESDLQLFHLSSSDQGSKKPETIISKEKAVSAEAEKPAENGTEIKGKESGASFEFVATA EPEKDKKSKKKKSKKLALDNAESVSEDKKKMDVDNDVAEKKVKKQKKKSQNLISTTAEEDALKVSETTVDDTETQDKESKKRKRSSPQEIATEPTEDEKP IEKSKRQKTEAAETQTQESNGQVIEDDVLASEKKEQKAKKSTKKQQNSSSEPTTAQRFQRVKADEVVFSDERLKDNSYWAKDGAESGYGAKAQEVLGQVK GKGFRHEKTKKKRGSYRGGQIDLHTHSVKFNYSDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57120			unknown protein		Lus10001627 [exp]	0	1
AT3G16080			Zinc-binding ribosomal protein...		Lus10011446 [exp]	2.8	0.9001
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	4.0	0.8925
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	5.0	0.8641
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	6.9	0.8768
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	8.5	0.8545
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10005348 [exp]	8.8	0.8620
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	9.5	0.8426
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	10.4	0.8624
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	13.8	0.8483
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	14.7	0.8794

Compare expression of checked genes

Lus10001627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.