Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29950 647 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G57210 606 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G19240 560 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 62 / 6e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 58 / 1e-08 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 48 / 2e-05 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001435 [exp] 1274 / 0 AT4G29950 661 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10037829 [exp] 61 / 3e-09 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10017104 [exp] 59 / 1e-08 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10008148 [exp] 49 / 2e-05 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 48 / 4e-05 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 45 / 0.0002 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076000 [exp] 812 / 0 AT4G29950 811 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.018G143100 [exp] 806 / 0 AT4G29950 791 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G069300 [exp] 72 / 6e-13 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.018G131300 [exp] 70 / 3e-12 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 62 / 7e-10 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 62 / 8e-10 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.007G134200 [exp] 46 / 8e-05 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10001628 pacid=23145998 polypeptide=Lus10001628 locus=Lus10001628.g ID=Lus10001628.BGIv1.0 annot-version=v1.0 ATGCCGGAATCCGCGCCGCCGCCACCTCCTCCTCCTCCCTCCCTTCCTCCTACCAATTCCTTCCCGCGCAGCAGCTCTTCCCCTTACGCCAACCTCAGAG GCCTACAATGGCGTATGGATCTCGGAATTCTACCTTCTTCTTCTTCTGCTCCTTCCTCCTCAATTGATCTTCTCCGCCGCGTCACTGCCGATTCCCGCAG AAGATATGCAAGTTTGCGAAGGCATCTCTTAGTTGATCCACATCTACCTAAGGATGGAAGTAACTCACCTGACGTTGTTATTGACAATCCACTATCGCAG AACCCTGATAGCACCTGGGGACGTTTTTTCCGAAATGCTGAACTGGAGAAGACTGTTGATCAGGATTTATCACGTTTATATCCAGAACATGGGAGTTATT TTCAGACTACTGGATGTCAAGGAATGTTGAGGCGGATTCTATTGCTATGGTGTCTCCGGCATCCAGAGTATGGTTACCGACAAGGAATGCATGAGCTTTT GGCTCCTCTATTATACGTTCTTCACGTAGACATAAAGCGTCTTTCTGAAGTGCGAACAGAGTATGAAGACTACTTTACAGACAAGTTCGACGGCTTATCA TTTCACGGAAACAATCTCTCGTACAATTTTGATTTCAAAAAACTAATGGACAGCATGGAAGAAGAGAACGGCATCCAGGGGAACACTGCTAAAGTCGCAA GTCTTGATGATCTCGATACTGAGATCCAGACAATTATACATCTGAGCGATGCTTATGGCGCCGAAGGTGAATTAGGAATCGTATTGTCCGAGAAGTTCAT GGAACACGATGCCTACTGCATGTTTGATGCTTTAATGAATGGCGCTCAAGGTTCAGTTGCAATAACGGCATTCTTCTCCCCTTCCCCTGTGACTGGATCG GTTTCTGGGTTACCACCCGTGATTGAAGCTTCCACAGCACTTTATCATCTGCTCTCTGTAGTTGATTTGTCTCTCCACAGTCATCTTGTTGAGCTTGGTG TTGAGCCGCAGTACTTTTCGCTCCGTTGGTTAAGAGTTTTATTTGGAAGAGAATTCACCCTCGAAGATCTTCTGTTGATATGGGATGAAATATTTGCAGC AGATAATAAAAAGCTCTCCGGTGGTGTCAATGGTGAAGATCAAGAAACTTTGTGCTATAATATCTTTACTTCATCCAGAGGAGCATTGATATCAGGTATG GCAGTTGCTATGATACTACATCTGAGATCTTCCTTACTCGCCACGGAGAACGCTACTACTTGTCTCCAAAGACTGCTGAATTTCCCCCAGAGTGTCGACC TGGGAAAATTGATCGAAAAGGCGAAGTCTGTACAGGCACTTGCTATGAAATTTCATCTTATTTGTCCCACTCCATCGTTCGTTGGGGAATATAATCACAG TAAACCGACGAAAATCGCGAGAAGTCATACTCTTTCGTCAGAATCGGTATCCTCGATAACTCCTCTAACCAAGGTGCCGGATAGCTATTGGGAAGAGAAA TGGAGAGTTATGCAGAAGGCAAACGAAGTGAAGCATCAGAGTCTGGAAAAGAGAAATAAAATCCCAAGTACTCAGAAAAAGAGATGGTCGGAAAAGCTGA GGATCACTCTTTCCAGGACTGAATCTGATCCTTCTCCAGCTATTAAGGGGAATAATAAGCCTTCCGTACGAAGGAATCTGCTTAAGGATTTGTCCCGCGA ACTCGGTTTGGATGAAGATGATATCAAGGATGAAGATAATAGTAGTAGTGTTAATGGAAATTTCAATTGCTCGACTGAGGAGAGCTGCTTACGTGGCAAT GGTGGTAGTGAAGAGAACTCGCCGGCATTCTCGGAGCCGTCTAGTCCTCATAGTGGTGCTAACAATCACGAGAACGGGTCCGAGAAAAGTAGTGTCGGCT CGAATTCATCGATCGAGCAGCATAACGATTTAGTCATCCCGGTGGATTGCGGAAGTAGAAACGAGCGGGCAGAAAAACCACCATTGTCCGGCACGAAGAA ACTCCTTTCGAGTAAACTTCAGTGGATTTGGAAGTTTGGAAGGAGCTCAGGCGATGAACAAGAGGCAGTAGAGAGGAGAAATGACCGGGGGGTTGAGGCT ACGAAACCGGATATCGAGGAGGAGGAGGAGGATGTGCTAGGTGCTTCTTCTGCTGATGTATCTTTCCACTCTTATGCTAGCGCAAAAGGCGATACCTCTT TCGTAAACGAGCCAATCGCTGAGCCATACGAGCCAATCGCGACGGGTAATCTCCACGATCTCGGCCAGTCTATGCTCGGACACATTCAGGTAATTGAAGC AGTGTTGCAGCCTGATGCCGAGTCGGTGGAGAATTCGAATTCGTCGGATCAATCGAGAGCGGTGGCGGCTCTGAAGGAGCTGAGGAGGCTTAGCACTTCT CTGTCGGAGATGTGA
AA sequence Show only first row Show all	>Lus10001628 pacid=23145998 polypeptide=Lus10001628 locus=Lus10001628.g ID=Lus10001628.BGIv1.0 annot-version=v1.0 MPESAPPPPPPPPSLPPTNSFPRSSSSPYANLRGLQWRMDLGILPSSSSAPSSSIDLLRRVTADSRRRYASLRRHLLVDPHLPKDGSNSPDVVIDNPLSQ NPDSTWGRFFRNAELEKTVDQDLSRLYPEHGSYFQTTGCQGMLRRILLLWCLRHPEYGYRQGMHELLAPLLYVLHVDIKRLSEVRTEYEDYFTDKFDGLS FHGNNLSYNFDFKKLMDSMEEENGIQGNTAKVASLDDLDTEIQTIIHLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMNGAQGSVAITAFFSPSPVTGS VSGLPPVIEASTALYHLLSVVDLSLHSHLVELGVEPQYFSLRWLRVLFGREFTLEDLLLIWDEIFAADNKKLSGGVNGEDQETLCYNIFTSSRGALISGM AVAMILHLRSSLLATENATTCLQRLLNFPQSVDLGKLIEKAKSVQALAMKFHLICPTPSFVGEYNHSKPTKIARSHTLSSESVSSITPLTKVPDSYWEEK WRVMQKANEVKHQSLEKRNKIPSTQKKRWSEKLRITLSRTESDPSPAIKGNNKPSVRRNLLKDLSRELGLDEDDIKDEDNSSSVNGNFNCSTEESCLRGN GGSEENSPAFSEPSSPHSGANNHENGSEKSSVGSNSSIEQHNDLVIPVDCGSRNERAEKPPLSGTKKLLSSKLQWIWKFGRSSGDEQEAVERRNDRGVEA TKPDIEEEEEDVLGASSADVSFHSYASAKGDTSFVNEPIAEPYEPIATGNLHDLGQSMLGHIQVIEAVLQPDAESVENSNSSDQSRAVAALKELRRLSTS LSEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	0	1
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	2.0	0.7934
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	4.5	0.7754
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	6.0	0.7929
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	7.7	0.7650
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	11.5	0.7844
AT1G33490			unknown protein		Lus10039157 [exp]	12.2	0.7798
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	13.7	0.7607
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	15.5	0.7746
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	15.7	0.7721
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	17.0	0.7587

Compare expression of checked genes

Lus10001628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.