Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29960 217 / 1e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001435 [exp] 290 / 1e-91 AT4G29950 661 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075900 [exp] 238 / 1e-77 AT4G29960 250 / 2e-82 unknown protein Potri.018G143000 [exp] 231 / 3e-75 AT4G29960 251 / 5e-83 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001629 pacid=23145979 polypeptide=Lus10001629 locus=Lus10001629.g ID=Lus10001629.BGIv1.0 annot-version=v1.0 ATGGAGGAGCCAGCCGAGAGGGCGGAGACGTTTTCCAGCTCCGATCACACTTCTTCTGTTCATGAAACCCTCAAGCGACCCGCGATGTTCCCGGTCTTGT ACCCAACGCTAGTTCCTGGATTTACTTCTTCTTCGAACCAGCAACAGATGAATGGCGGGGCTGGCATTTACGCTGTACCTGTTCCGCCATGTATGGGACA AGTTGCTGGACTCCCTGCAGATTCCCTCATTCCTCTTACCTTTTCTATTCCAACTGCAATGAGTCCAGAAGCAGGCACTGCTGGTGATCATGGCCAAATT GGGCAACAACCTCAGCATCAACAGCAGGCCCCTAATCGACAAGTTGCAGTAAGGAGATTCCAGATTGCGTTTCAGCTCGACTTGTTCCTGATCATCAAGC TAGCTGCTGTGATATTCTTGTTCAACCAAGATGGATCAAGGCAAAGGCTTATTGTCCTCGTGCTTTTCGCCTCGCTTGTATATTTGTATCAAACCGGAGC CTTGACGCCATTGGTGCGATGGCTGTCGCAAAATATGCAGAGAGCAGCAGCACCCCCTCAACCACGCCGGGCTGCTGGGAGGGCTGAAGATGCCAATGGT CTTGCTGCTGCAGGGCAGAATGAGAATGTACCTTTAGCAGAAGGGGAAGGAGGTGGCATCGGCGAGGAGGAGGAGAATCGGGGAGTACAAGACGGAAACG AGGGAGCTGAGAACGGGAATATCGAGGGTGCCGGTAGAGGAGGCAACCGTTTGTGGGGGATAGTGAAGGAAGTTCAGATGATAGTGTTCGGCTTCATTAC TTCTCTCCTCCCTGGCTTTCATAATATAGATTGA
AA sequence Show only first row Show all	>Lus10001629 pacid=23145979 polypeptide=Lus10001629 locus=Lus10001629.g ID=Lus10001629.BGIv1.0 annot-version=v1.0 MEEPAERAETFSSSDHTSSVHETLKRPAMFPVLYPTLVPGFTSSSNQQQMNGGAGIYAVPVPPCMGQVAGLPADSLIPLTFSIPTAMSPEAGTAGDHGQI GQQPQHQQQAPNRQVAVRRFQIAFQLDLFLIIKLAAVIFLFNQDGSRQRLIVLVLFASLVYLYQTGALTPLVRWLSQNMQRAAAPPQPRRAAGRAEDANG LAAAGQNENVPLAEGEGGGIGEEEENRGVQDGNEGAENGNIEGAGRGGNRLWGIVKEVQMIVFGFITSLLPGFHNID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29960			unknown protein		Lus10001629 [exp]	0	1
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	1.4	0.9240
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	1.7	0.9236
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	2.4	0.9254
AT1G07080			Thioredoxin superfamily protei...		Lus10026384 [exp]	3.0	0.9040
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10040625 [exp]	3.5	0.9202
AT1G31940			unknown protein		Lus10012117 [exp]	3.9	0.9129
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	5.5	0.9007
AT3G53490			unknown protein		Lus10003989 [exp]	5.5	0.9093
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	6.2	0.8738
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	6.9	0.8886

Compare expression of checked genes

Lus10001629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.