Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 766 / 0 Calmodulin-binding protein (.1) AT2G18750 730 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 704 / 0 Calmodulin-binding protein (.1.2) AT2G24300 504 / 1e-172 Calmodulin-binding protein (.1.2) AT4G31000 482 / 2e-164 Calmodulin-binding protein (.1.2) AT5G62570 318 / 9e-102 Calmodulin binding protein-like (.1.2) AT1G73805 278 / 1e-86 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 235 / 2e-69 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001436 [exp] 1162 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10011248 [exp] 715 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 705 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 574 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 572 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 310 / 6e-97 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 308 / 2e-96 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 294 / 5e-92 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 241 / 4e-70 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095300 [exp] 830 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 750 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 731 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 717 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 614 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 598 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 367 / 1e-119 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 350 / 4e-113 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 328 / 2e-106 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 328 / 9e-106 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10001630 pacid=23145986 polypeptide=Lus10001630 locus=Lus10001630.g ID=Lus10001630.BGIv1.0 annot-version=v1.0 ATGGCTAGAGGAAAGAGGAGCTCCGATGGAGGTGACGATGACGAGCAGCAGCCTGAACGCAAACGCCCTGCTTTAGCTAGCGTCATTGTAGAAGCTTTGA AGGTGGATAGTCTGCAGAAGCTGTGCTCATCTTTGGAACCTATTCTTCGTAGGGTGGTGAGTGAAGAAGTTGAGCGTGCCTTAGCAAAGTTGGGCCCTCC TAGATCAGTCAATGGAAGGGCTTCACCAAAACGAATTGAAGGCACAGGTGGAAGAAAGTTACAGTTGCAGTTTAGGTCTAGATTGTCTCTCCCTCTTTTC ACTGGAGGAAAGGTGGAGGGGGAACAGGGCGCTGCAGTTCATGTAGTCCTTTTCGATGCTAACACTGGGCATGTTGTAACTTCTGGACCTGAAGCTTCTG CAAAACTTGATGTCATCGTCCTTGAAGGTGATTTCAACAATGAAGATGAGGAAGGCTGGACAGAGGAAGAGTTCGAGAGCCATGTGGTAAAAGAACGTGA AGGGAAAAGACCTTTATTGACTGGAGAGTTGCAAGTAGTGCTCAAAGAAGGAGTTGGAACACTGGGAGAATTCACTTTTACTGACAATTCCAGCTGGATT AGGAGCAGGAAGTTCAGGCTTGGCTTGAAAGTCTCCAGTGGATACTGTGAAGGAATGCGTGTCCGTGAGGCCAAGACTGAAGCTTTCACGGTTAAAGATC ACAGGGGAGAATTGTACAAGAAACACTATCCTCCAGCATTGAGTGACGAAGTATGGAGATTGGAGAAAATCGGCAAGGATGGTTCGTTTCACAAAAAGCT GAATCAGCAGGGAATATCCACAGTTGAAGATTTTCTACGCCTTTATGTCAAAGACGCTCAAAAGTTGCGGAGTATACTGGGAAGTGGTATGTCAAATAAG ATGTGGGAGGCTCTCTTAGAGCATGCAAAGACTTGTGTCCTGAGTGGCAAACTTTATATCTTTTATCCTGAAGATTCAAGGAATGTAGGTGTTATGTTTG ACAACATCTATCAACTCAATGGTCTCATTTCTGGGGACCAGTATTATTCAGCTGATTCTCTATCTGATGAACAGAAGGTTTATGTAGATACATTAGTGAA AAAGGCATATGAGAACTGGAATCAAGTTGTAGAGTATGACGGAAAATCCCTACTGAGCCTTAAGCAGACAAAGAGGCCAACTAGTTCCAGGACTGAAGGC CGGGTAGTTCACCCTAATGCATCACTTGATCATCAGACGCAGCAGCTACAGCGGCTGCCTGCTTCAGTTCTGCATGAGAAATCTCCGGTGCCGTCTGCAA TTGGAGTTCCCGGGTTCAACGACAATATGGAGACTAGATACTCGCCACTATCTCAGCTAACACACGGGAATAATCCCCGTTCCCAGTTCGAGACCATGAC GTACCCTCCTCACGAGCATTCGGCAGGCCAGAGCAGCCCCATCGGTGGCCTGGCATTGCATCATCCTCCCCCACCACAAGCAGCTTCATTCCAAACACTG GTGGGGTCGCCGTTTCAGCAATCTGGTCTGACTCCATTCGACGACTGGAGTAACAACAATAGCCGGGGGGATGAGTTCCTAACGGAGGAAGACATCCGGA TGAGAAGCAACGAGATGCTGGAGAACGAGGATATGCAGCACTTGCTCCGGCTGTTCAGTATGGGAGGGCATCATCATCATGGATCGATGAACGTGCCGGA CGATGCGTTCAGCTTCCCATACATGGCGCCATCGCCGATGATGCCGAACTATGACGTGGATCAGATGCGCCCTCCTGGTAAAGCAGTGGTGGGGTGGCTG AAGATCAAGGCTGCAATGAGGTGGGGGTTCTTCATCAGGAAGAAGGCTGCAGAGAGGCGAGCCCAACTTGTCGAGCTAGACGAGGAAGAAGAAGAAGAAT AA
AA sequence Show only first row Show all	>Lus10001630 pacid=23145986 polypeptide=Lus10001630 locus=Lus10001630.g ID=Lus10001630.BGIv1.0 annot-version=v1.0 MARGKRSSDGGDDDEQQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPPRSVNGRASPKRIEGTGGRKLQLQFRSRLSLPLF TGGKVEGEQGAAVHVVLFDANTGHVVTSGPEASAKLDVIVLEGDFNNEDEEGWTEEEFESHVVKEREGKRPLLTGELQVVLKEGVGTLGEFTFTDNSSWI RSRKFRLGLKVSSGYCEGMRVREAKTEAFTVKDHRGELYKKHYPPALSDEVWRLEKIGKDGSFHKKLNQQGISTVEDFLRLYVKDAQKLRSILGSGMSNK MWEALLEHAKTCVLSGKLYIFYPEDSRNVGVMFDNIYQLNGLISGDQYYSADSLSDEQKVYVDTLVKKAYENWNQVVEYDGKSLLSLKQTKRPTSSRTEG RVVHPNASLDHQTQQLQRLPASVLHEKSPVPSAIGVPGFNDNMETRYSPLSQLTHGNNPRSQFETMTYPPHEHSAGQSSPIGGLALHHPPPPQAASFQTL VGSPFQQSGLTPFDDWSNNNSRGDEFLTEEDIRMRSNEMLENEDMQHLLRLFSMGGHHHHGSMNVPDDAFSFPYMAPSPMMPNYDVDQMRPPGKAVVGWL KIKAAMRWGFFIRKKAAERRAQLVELDEEEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10001239 [exp]	1.4	0.9394
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	1.7	0.9424
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	6.0	0.9370
AT3G14460			LRR and NB-ARC domains-contain...		Lus10007261 [exp]	6.3	0.9298
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	7.7	0.9327
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	7.7	0.9356
AT2G39950			unknown protein		Lus10040223 [exp]	8.4	0.9301
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	10.9	0.9170
AT2G39950			unknown protein		Lus10028266 [exp]	12.0	0.9216
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	13.3	0.9245

Compare expression of checked genes

Lus10001630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.