Plant FIBer expression Database

Lus10001632 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001438
[exp]
99 / 7e-25 AT5G57345 120 / 4e-34 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10001632 pacid=23145982 polypeptide=Lus10001632 locus=Lus10001632.g ID=Lus10001632.BGIv1.0 annot-version=v1.0
ATGGGGATAGTATCGATAGCTCCATCATGGAATCATCAGACCTTCCTCATCAACGGAATCAACACAACTCCCGCTCATTCTCGCCGCTCTTCCGCAAAGT
ACACCCGCCTCCCCTCCACCACCGCCGCCGTTTCATCCCTTCATGATTCGCCATCGCCGCCGCCGCCGCTGTATGTAACTGCTCAATCTCAATTATCGAT
CCAAAATGTTCGATTCAATCGCTCTGATTGGTTTGAATTGTGTTACAGGAACAGGAAGCATGAGAAGGAGGCGGAGTTGTTCAGAGTGGGGAAGCAAGTA
GCAGTAGCGGTACTGGCTGCCGGAATACTCACTCTGGGGGCGGCAGGCGATGCTTCAGCTGCTAAGTCCGGTGGGAGGATCGGCGGACAGACTTTCCGGT
CTTCCCAATCTCCTCCCTCTCCTTCCGGTCTTCGCAACCTCCTCCTTCCCGCTCTTCTCCGCGCATCAACAACAATTCCTCTCGAGCGTGGTTACATAAG
CTTCATAGTCGTTCTTTTTATGACTGTTACGAGTAGGACCAATATATACGTGAACCCTCCTCCCATAGCTCCGCCGTTGGGTGGAGGCTACGGTTATGGA
TATGGTGTGCCATTCTACGGCGGATGGGGTTGGTCACCCTTCTCCTTCTTTGCTCCGGCTCCTTCCGTGGCCGTTGGCGTTGGTGGCGGATTCGATACCT
TGGCTCTGTTTCTATTCCTCGGTGCTGGCGCAGCTGTAGTCCGGAGGTTCCTCAGATCGTTCCGGGACCGGGATGATGACTAA
AA sequence
>Lus10001632 pacid=23145982 polypeptide=Lus10001632 locus=Lus10001632.g ID=Lus10001632.BGIv1.0 annot-version=v1.0
MGIVSIAPSWNHQTFLINGINTTPAHSRRSSAKYTRLPSTTAAVSSLHDSPSPPPPLYVTAQSQLSIQNVRFNRSDWFELCYRNRKHEKEAELFRVGKQV
AVAVLAAGILTLGAAGDASAAKSGGRIGGQTFRSSQSPPSPSGLRNLLLPALLRASTTIPLERGYISFIVVLFMTVTSRTNIYVNPPPIAPPLGGGYGYG
YGVPFYGGWGWSPFSFFAPAPSVAVGVGGGFDTLALFLFLGAGAAVVRRFLRSFRDRDDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57345 unknown protein Lus10001632
[exp]
0 1
AT5G57345 unknown protein Lus10001438
[exp]
1.0 0.9653
AT3G21750 UGT71B1 UDP-glucosyl transferase 71B1 ... Lus10026795
[exp]
1.4 0.9569
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Lus10013727
[exp]
2.0 0.9525
AT5G17170 ENH1 enhancer of sos3-1, rubredoxin... Lus10003157
[exp]
2.4 0.9548
AT5G11840 Protein of unknown function (D... Lus10027492
[exp]
3.2 0.9348
AT1G05140 Peptidase M50 family protein (... Lus10027190
[exp]
3.5 0.9464
AT1G77090 Mog1/PsbP/DUF1795-like photosy... Lus10028633
[exp]
5.2 0.9356
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Lus10016033
[exp]
6.3 0.9467
AT4G00895 ATPase, F1 complex, OSCP/delta... Lus10012618
[exp]
7.5 0.9317
AT1G77090 Mog1/PsbP/DUF1795-like photosy... Lus10018931
[exp]
8.4 0.9377

Lus10001632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.