Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71060 602 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 355 / 7e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 264 / 2e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 248 / 7e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 246 / 5e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 243 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 237 / 3e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 226 / 2e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 225 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 215 / 9e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001588 [exp] 363 / 3e-118 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 260 / 7e-79 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 256 / 3e-77 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 253 / 6e-76 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 231 / 4e-69 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 225 / 2e-66 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 223 / 3e-66 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 214 / 8e-63 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 216 / 1e-62 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114700 [exp] 622 / 0 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 351 / 7e-116 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 259 / 2e-78 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 251 / 1e-76 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 241 / 5e-73 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 244 / 8e-73 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 221 / 1e-65 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 218 / 5e-64 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G247400 [exp] 217 / 5e-63 AT5G11310 638 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 206 / 6e-59 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001633 pacid=23145989 polypeptide=Lus10001633 locus=Lus10001633.g ID=Lus10001633.BGIv1.0 annot-version=v1.0 ATGGGTTGCCGGCGCCTCTTCTCCGTCGCCCTGAAACTTCCGTCCGCCACTCACTCTTCCGTTCCACCGTTCACTAGCCCACTTCCTATGACGACACTTC CCTTCATCAACACTCGCTATTTCACCGCGAATGGAGGAGGAGCTCCTCCTCTGGGCGACTCCTCAGCTACCGACGAGCTCAACACGAGGAATAGCCTACT GGTTCGATCCGACGACAAAACAATCACCGGAGACGCCGATCGCCTCTGCAAATTGCTATCGAAACAACCCAACCCGAACACCATCGCTACTTTGCTGGAA GGAGATGCTGCAATCCAAAATCTATCCCCAACTCTGGTGCTCGAGGTGCTGAACCGCCTCACCAATGCAGGCGCCCTAGCATTGTCCTTCTTCCGATGGG CGGAGAAGCAGGAAGGATTCCGTCACGGCACCGACTGCTACAACGTCTTGATCGAGTCTCTGGGTAAGATCAAGCAGTTTAAGCTGGTATGGAGTTTGGT CGCCGATATGAAGAAACAAGAGTTATTGAGTAAAGACACCTTCGCGTTGATTTCCAGGCGATACGCTCGAGCAAAGAGAGTTAAAGAAGCGATCCATGCG TTTGAGCAGATGGAGAAGTTCGGGTTCAAGCTTGAATCGTCGGATTTCAACCGGTTGCTGGATATACTGTGCAAGTCGAGACAAGTGAAGAGTGCACACC AGCTGTTCGATAAAATGAAGAAGAACAAATTCAAATTCCAGCCCGATATAAAGTCGTATACTATATTGCTGGAAGGATGGTCACAGGAGAAGAATTTAGC AAGATTAAACCAAGTCTGTATGGAGATGAAAGACGATGGGTTCCAGCCGGATGTTGTTACCTACAGTATTCTCATGAATGCGTATTGCAAAGTTGGCAAG TATGACGAGGCAGTCAATTTGTTCCATGACATGAAAGATAAGAACTGCAAACCGAATCCTCACATCTTCTGTACTTTGATCAATGCGTTAGGCTCTGTAA AGAGGTTGAACGAAGCTATTCGTTTCTTCGAAGAATCGAAGGCTTGTGGTTTCGCTCCCGAGGCGCCTACTTACAATGCTGTTGTGGGAGCATACTGTTC TTCCCTAAAGATGGCTGATGCTTTCAGGACGGTAATTGAAATGAGAGAGATGGGTATTGGTCCGAATTCGAGAACTTATGACATAGTTCTTCATCATTTG GTGAAGAATCGACGAATAGAAGAAGCTTGTTCAGTTTTTCAGAGGATGCAAAGTAAGGAGGAGGGCTGCGAGCCTACGGTGAGTACGTATGAGATTATGA TGCGGATGTTTTGCAATGAGGGTAAAGTTGACATGGCGGTCGAGGTCTGGGAGGAAATGAAGGCCAAGGGAGTTCTTCCTGGTATGCATATGTTCTCTAA GTTGATTAGTAGCTTCTGTGAGAAAGGTAAGGTGGACGAAGCTTGCAAGTATTTCCAGGAAATGCTGGATGTTGGTATTCGGCCTCCGGCTGCATTGTTC GGTAATCTGAAGGAGACTCTTGTGGAGAATGGTCAAAAGGTTACTGCTTTGGCTCTTGCAGAGCAGATGCGTAAGCTCAGGAAAACACCGTTAGATGGTT CGTTACTGCCGAAAGACTGA
AA sequence Show only first row Show all	>Lus10001633 pacid=23145989 polypeptide=Lus10001633 locus=Lus10001633.g ID=Lus10001633.BGIv1.0 annot-version=v1.0 MGCRRLFSVALKLPSATHSSVPPFTSPLPMTTLPFINTRYFTANGGGAPPLGDSSATDELNTRNSLLVRSDDKTITGDADRLCKLLSKQPNPNTIATLLE GDAAIQNLSPTLVLEVLNRLTNAGALALSFFRWAEKQEGFRHGTDCYNVLIESLGKIKQFKLVWSLVADMKKQELLSKDTFALISRRYARAKRVKEAIHA FEQMEKFGFKLESSDFNRLLDILCKSRQVKSAHQLFDKMKKNKFKFQPDIKSYTILLEGWSQEKNLARLNQVCMEMKDDGFQPDVVTYSILMNAYCKVGK YDEAVNLFHDMKDKNCKPNPHIFCTLINALGSVKRLNEAIRFFEESKACGFAPEAPTYNAVVGAYCSSLKMADAFRTVIEMREMGIGPNSRTYDIVLHHL VKNRRIEEACSVFQRMQSKEEGCEPTVSTYEIMMRMFCNEGKVDMAVEVWEEMKAKGVLPGMHMFSKLISSFCEKGKVDEACKYFQEMLDVGIRPPAALF GNLKETLVENGQKVTALALAEQMRKLRKTPLDGSLLPKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71060			Tetratricopeptide repeat (TPR)...		Lus10001633 [exp]	0	1
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	4.5	0.8686
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10022701 [exp]	6.0	0.8512
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	6.0	0.8646
AT5G65920			ARM repeat superfamily protein...		Lus10005500 [exp]	7.1	0.8411
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	7.4	0.8598
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	9.5	0.8657
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	11.7	0.8078
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	17.1	0.8664
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	24.2	0.8562
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	31.7	0.8552

Compare expression of checked genes

Lus10001633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.