Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25910 209 / 5e-67 ATCNFU3, NFU3 NFU domain protein 3 (.1) AT5G49940 182 / 2e-56 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) AT4G01940 80 / 2e-17 ATCNFU1, NFU1 NFU domain protein 1 (.1) AT1G51390 58 / 1e-09 ATNFU1, NFU5 NFU domain protein 5 (.1) AT3G20970 58 / 2e-09 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) AT2G18370 54 / 6e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G15050 42 / 0.0001 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001439 [exp] 276 / 5e-93 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1) Lus10001432 [exp] 222 / 2e-73 AT2G18370 53 / 6e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10015481 [exp] 182 / 4e-56 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Lus10001635 [exp] 94 / 1e-23 AT2G18370 37 / 9e-04 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10001431 [exp] 92 / 9e-23 AT2G18370 37 / 6e-04 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10009999 [exp] 80 / 4e-17 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1) Lus10043440 [exp] 57 / 5e-09 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10034140 [exp] 50 / 4e-07 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Lus10025151 [exp] 45 / 5e-06 AT5G59320 103 / 1e-29 lipid transfer protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165600 [exp] 221 / 1e-71 AT4G25910 300 / 3e-104 NFU domain protein 3 (.1) Potri.003G009300 [exp] 172 / 2e-52 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.004G222600 [exp] 168 / 8e-51 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2) Potri.002G192200 [exp] 82 / 2e-18 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1) Potri.014G117700 [exp] 74 / 3e-15 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1) Potri.010G237400 [exp] 64 / 1e-11 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2) Potri.001G232700 [exp] 45 / 7e-06 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 44 / 2e-05 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.014G098000 [exp] 39 / 0.0007 AT5G59310 71 / 9e-17 lipid transfer protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0232 [flax] [poplar] NifU PF01106 [flax] [poplar] NifU NifU-like domain
Representative CDS sequence Show only first row Show all	>Lus10001634 pacid=23145981 polypeptide=Lus10001634 locus=Lus10001634.g ID=Lus10001634.BGIv1.0 annot-version=v1.0 ATGGCGGCTTATAACAACATGTTCCTGTCTGCCACCCTGGCCGTGATTGCCGCCATCGTTTTGATGATGGCCGGAAACAGTAAGGCGGAATGGCCGCCTC ATTGTGCCGGCTTCACCAAGTTGGTGACGAAGCCCTGTCTCGACTATGTTACGGGGAACGCTACCGAAGTGCCGAAACCGTGCTGCGAAGGGTTGGCAAC TTTCACGGCGGACGCCAAAAAGTCTACCGCCAAAAGGAGGGCCGGTTGCTATTGCGTTAAGCAATCCGCAATGAATCCGGATTATGAAAAGGGCCGAATC CAGAATGTTGCCACCACTTGCGGTTATAAGCTTCCAAACCCCACCCTCGACTGCCAGACTAGCAGCAGCAGCAGCAGGCTGAATCTGTCTCTGTACGGAA GACACAAGCTTCCTGCTGCACTTCAATGGCGGACGACTGATGCTGCTTCCGTACGAAGAAGAAGTAGTAGTGTAATAAGGCGGGTGATGCCGTTGACGGA GGAGAACGTGGAGAAAGTACTGGAAGAGGTGAGGCCTGGTTTAATGGCGGACGGTGGCAACGTTGCTCTCCACGAGATAGACGGACTGGTGGTGGTGTTG AAGCTTCAAGGCGCTTGTGGTTCATGCCCGAGTTCTGCTATGACGCTTCAGATGGGGATCGAGACTCGCCTCCGTGATAAGATACCTGAGATCATGTCGG TTGAGCAGATCATGGATACTGAGACCGGGTTAGAGTTGAACGACGACAATGTTGAGAAGGTGCTGTCGGAGATCAGACCTTACCTGGGGGGAACTGGTGG CGGGGAGCTTCAACTGATTGGCATCAATGACTACGTTGTACGGGTTCGGCTGACTGGACCTGCCGCCGGAGTCACCACCGTCCGTGTAGCTACCACCCAG AAGCTTAAAGAGAAGATCCCCTCCATTGCTGCTGTCCAGCTTACTGATTGA
AA sequence Show only first row Show all	>Lus10001634 pacid=23145981 polypeptide=Lus10001634 locus=Lus10001634.g ID=Lus10001634.BGIv1.0 annot-version=v1.0 MAAYNNMFLSATLAVIAAIVLMMAGNSKAEWPPHCAGFTKLVTKPCLDYVTGNATEVPKPCCEGLATFTADAKKSTAKRRAGCYCVKQSAMNPDYEKGRI QNVATTCGYKLPNPTLDCQTSSSSSRLNLSLYGRHKLPAALQWRTTDAASVRRRSSSVIRRVMPLTEENVEKVLEEVRPGLMADGGNVALHEIDGLVVVL KLQGACGSCPSSAMTLQMGIETRLRDKIPEIMSVEQIMDTETGLELNDDNVEKVLSEIRPYLGGTGGGELQLIGINDYVVRVRLTGPAAGVTTVRVATTQ KLKEKIPSIAAVQLTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	0	1
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	1.0	0.9578
AT1G16080			unknown protein		Lus10024094 [exp]	1.7	0.9484
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	2.6	0.9402
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	2.8	0.9491
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	3.0	0.9342
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	3.5	0.9468
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	3.5	0.9426
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	4.5	0.9327
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	6.0	0.9306
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	6.7	0.9456

Compare expression of checked genes

Lus10001634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.