Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29900 1546 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 1525 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 1506 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 965 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 929 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G57330 884 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 882 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 875 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 871 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT2G41560 870 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001428 [exp] 2080 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10034840 [exp] 1532 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10033386 [exp] 1531 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10018687 [exp] 900 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10042040 [exp] 890 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 878 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10016366 [exp] 867 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 859 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10031053 [exp] 843 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072900 [exp] 1770 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 1710 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 1550 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 1531 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.018G139900 [exp] 1342 / 0 AT5G57110 1210 / 0.0 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) Potri.005G215600 [exp] 1014 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 997 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 993 / 0 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 969 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 968 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus PF12515 [flax] [poplar] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10001638 pacid=23145992 polypeptide=Lus10001638 locus=Lus10001638.g ID=Lus10001638.BGIv1.0 annot-version=v1.0 ATGAGTAACCGATTCAAAGGTTCGCCGTACAGACGGCGCCATGACCTGGAGTCTTCCGGAGGTCGCTCCACTGACTTTGACCGCGACGATGACTACGAGT CCTCCAGTCCGTTCAACATTCGCAGCACCAAGAATGCTTCTGTCGACCGTCTGCGCCGTTGGAGACAAGCTGCTCTGGTGCTGAATGCTTCTCGCCGATT CCGGTACACTTTGGATTTGAAGAAGGAAGAAGAGAAGAAACAGATTCTGCGGAAGATTAGAGCTCATGCTCAAGCTATTCGAGCTGCGTATCTGTTCAAG GAGGCTGGCCTCCGTGTTAATGGGTCAGGGGACACGCATCAGACCCTCACTGGGGAATTTACAGTTTCTCCGGAACAACTCTCTACAGTCACAAGGGATC ATAACATTGCTGCTCTACAGGAACTTGGTGGTGTTAAAGGAATTGCCGAGGCGCTGAAAACAAATCCAGAGAAGGGTATTGTTGGAGATGATGCAGATTT AATGAAACGAAGGACTGCATTTGGGTCTAACACATATCCTCAGAGAAAAGGAAGGAGTTTCTGGATGTTTCTTTGGGAAGCTTGGCAAGATCTGACTCTA ATCATATTGATGGTAGCTGCAGCTGCTTCTTTGGCTCTGGGCATAAAAACAGAGGGTATTAAGAAAGGGTGGTACGATGGTGTCAGCATTGCCTTTGCAG TTATTCTCGTAATTGTTGTGACTGCCATTAGTGATTATAGACAATCTCTACAATTCCAGAACTTGAATGAGGAGAAGAGGAACATACATTTGGAGGTTAT TAGAGGTGGGAGGAGAGTTGACGTTTCAATCTATGACATAGTTGTTGGTGATGTCATACCACTGAACATCGGTGACCAGGTCCCTGCTGATGGAGTTTTG ATTACTGGTCATTCTCTTGCTATTGATGAATCCAGCATGACTGGAGAAAGCAAGATTGTGAACAAGAACACTTCAGAACCATTTCTAATGTCTGGCTGTA AGGTGGCTGATGGTAGCGGCGCTATGCTGGTGACAGGTGTTGGAATCAATACTGAATGGGGGTTGCTTATGGCAAGCATTTCAGAAGATACTGGTGAAGA AACACCATTGCAGGTGCGTCTTAATGGTGTGGCGACTTTCATTGGTATTGTTGGACTCTCAGTAGCTGTTCTTGTCCTTGTTGTCCTTGTGATCAGGTTT TTCACTGGCCATACGAAAAATCCAGATGGAAGTGTTCAGTTCAGAGCAGGACATACTAGCGTTAGCGCTGCTGTAGATGGAGCTATCAAAATTTTCACTG TTGCGGTCACAATTGTCGTAGTTGCTGTGCCTGAAGGGCTGCCCCTAGCTGTTACTTTAACTCTTGCTTACTCAATGAGGAAAATGATGAGAGACAAGGC CTTGGTTCGCAGGCTTTCTGCTTGTGAAACCATGGGCTCTGCTACAACTATTTGCAGTGATAAAACTGGTACCTTAACTTTGAATGAGATGACAGTTGTT GACGCTTTTGTTGGAGGAAAAAAGCTTGAATGTGCAGACAACAAAACGGAGTTGTCTAGCACCGTTTGTTCTCTAATCATCGAAGGTGTTGGACAAAACA CCAATGGAAGCGTTTTTGTTCCTGAGGGAGGAGGTGATGTTGAGGTTTCGGGATCTCCTACAGAGAAAGCTATTCTAGTGTGGGCATTAAAGCTGGGGAT GAATTTTGAAGCTGTACGATCAGAATCAACCTTGATTCATGTCTTCCCTTTCAACTCAGAGAAGAAAAGAGGCGGTGTGGCTTTGCAAATGCCTGACTCA CAAGTACATATACACTGGAAGGGGGCTGCTGAAATAGTTCTAGCATGCTGCACATGGTACATTGACCAAAGCGGTGATGCAGTAGCCATGAGTGAAGATA AGGGAAGTCAGAGTGAAGATAAGGCTATTTTCTTCAAGGAAGGCATTGAAGATATGGCTGCTCGTAGTTTGCGTTGTGTTGCCATTGCATATAGGTCATA CGAGAGGGAGAAAGTTCCTGCTGATGAACAACAGCTTATGCAGTGGTCATTACCTGAAGATGATCTCGTTTTGCTCGCTATTGTTGGTTTAAAGGATCCC TGCCGACCTGGTGTAAGAGATGCTGTCCGATTATGTCAAAAAGCTGGAGTTAAGGTGCGAATGGTCACTGGTGACAATCTCCAAACTGCTAAAGCAATAG CGTTGGAATGCGGGATACTAGGCTCTGATGATGATGCTGTGGAGCCAAATCTTATTGAAGGAAAAACATTCCGTGCTTACTCAGATGAGCAAAGGGAAGA AATTGCAGAGAAGATCTCGGTAATGGGTCGATCTTCCCCAAATGATAAACTTCTTCTCGTCCAAGCGCTGAGAAAAAGAGGGCACGTTGTTGCCGTCACT GGAGATGGCACAAATGATGCTCCTGCATTACATGAGGCGGACATTGGTCTTTCTATGGGTATTCAAGGGACAGAAGTTGCGAAAGAGAACTCCGATATCA TCATTCTTGATGATAATTTTGCTTCAGTTGTGAAGGTTGTACGGTGGGGAAGGTCAGTGTACGCCAACATTCAAAAGTTTATCCAGTTTCAGCTCACCGT CAATGTCGCTGCACTTATTATAAACGTTGTAGCTGCTATTTCTTCCGGCGACGTGCCATTAAACGCCGTGCAGCTTCTGTGGGTTAATCTCATCATGGAT ACTCTTGGAGCATTAGCGTTGGCCACTGAGCCACCAACAGATCACCTTATGGATCGCCCTCCTGTTGGTCGAAGGGAACCACTGATCACTAACATAATGT GGAGGAACCTTCTGATTCAGGCAGCATATCAAGTAAGCGTACTATTGACTCTAAACTTCCAAGGAAAGAAGTTACTGGGTTTACAACATGACAACCCTGA CCATGCAAACAAAGTGAAGAACACCCTCATTTTCAATGCATTTGTGCTTTGCCAAATCTTCAACGAGTTCAACGCTAGAAAGCCCGACGAGAAGAACATT TTCAGAGGAGTTACGAAGAACCATCTCTTCATTGCAATAGTTGGTGTAACCCTCATCCTTCAGGTGGTTATTATCGAGTTCATCGGGAAGTTCACATCGA CAGTAAAGCTCAACTGGAAGCAGTGGCTAATCTCGGTGGCTATCGCTTTCATCAGCTGGCCGCTCGCCATCGTTGGTAAGCTGATACCCGTCTCCGAAAC TCCTCTACACGAGTTCTTTACGAAGATCTTCCGACGCGGACATTGA
AA sequence Show only first row Show all	>Lus10001638 pacid=23145992 polypeptide=Lus10001638 locus=Lus10001638.g ID=Lus10001638.BGIv1.0 annot-version=v1.0 MSNRFKGSPYRRRHDLESSGGRSTDFDRDDDYESSSPFNIRSTKNASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFK EAGLRVNGSGDTHQTLTGEFTVSPEQLSTVTRDHNIAALQELGGVKGIAEALKTNPEKGIVGDDADLMKRRTAFGSNTYPQRKGRSFWMFLWEAWQDLTL IILMVAAAASLALGIKTEGIKKGWYDGVSIAFAVILVIVVTAISDYRQSLQFQNLNEEKRNIHLEVIRGGRRVDVSIYDIVVGDVIPLNIGDQVPADGVL ITGHSLAIDESSMTGESKIVNKNTSEPFLMSGCKVADGSGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLVVLVIRF FTGHTKNPDGSVQFRAGHTSVSAAVDGAIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMRDKALVRRLSACETMGSATTICSDKTGTLTLNEMTVV DAFVGGKKLECADNKTELSSTVCSLIIEGVGQNTNGSVFVPEGGGDVEVSGSPTEKAILVWALKLGMNFEAVRSESTLIHVFPFNSEKKRGGVALQMPDS QVHIHWKGAAEIVLACCTWYIDQSGDAVAMSEDKGSQSEDKAIFFKEGIEDMAARSLRCVAIAYRSYEREKVPADEQQLMQWSLPEDDLVLLAIVGLKDP CRPGVRDAVRLCQKAGVKVRMVTGDNLQTAKAIALECGILGSDDDAVEPNLIEGKTFRAYSDEQREEIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVT GDGTNDAPALHEADIGLSMGIQGTEVAKENSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMD TLGALALATEPPTDHLMDRPPVGRREPLITNIMWRNLLIQAAYQVSVLLTLNFQGKKLLGLQHDNPDHANKVKNTLIFNAFVLCQIFNEFNARKPDEKNI FRGVTKNHLFIAIVGVTLILQVVIIEFIGKFTSTVKLNWKQWLISVAIAFISWPLAIVGKLIPVSETPLHEFFTKIFRRGH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	1.4	0.9302
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	2.0	0.9029
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	2.0	0.9300
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	6.3	0.8643
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	7.7	0.8887
AT3G49490			unknown protein		Lus10032925 [exp]	9.2	0.8158
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	9.4	0.8800
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	9.6	0.8617
AT3G12020			P-loop containing nucleoside t...		Lus10016236 [exp]	10.2	0.8574
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	10.8	0.8773

Compare expression of checked genes

Lus10001638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.