Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62050 326 / 2e-108 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 292 / 4e-95 OXA1L inner membrane protein OXA1-like (.1) AT3G44370 77 / 5e-15 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT3G49150 49 / 5e-06 F-box/RNI-like superfamily protein (.1) AT1G65080 47 / 1e-05 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G44890 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001427 [exp] 613 / 0 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 329 / 3e-109 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10032381 [exp] 255 / 4e-81 AT5G62050 270 / 4e-87 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10026414 [exp] 68 / 5e-12 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091800 [exp] 374 / 8e-127 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 370 / 1e-125 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.018G140100 [exp] 368 / 9e-125 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.009G121800 [exp] 54 / 1e-07 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.013G087950 [exp] 54 / 2e-07 AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.001G237800 [exp] 47 / 1e-05 AT2G28800 566 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4) Potri.009G029100 [exp] 47 / 2e-05 AT2G28800 545 / 0.0 ALBINO 3, 63 kDa inner membrane family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10001639 pacid=23145993 polypeptide=Lus10001639 locus=Lus10001639.g ID=Lus10001639.BGIv1.0 annot-version=v1.0 ATGGCGTACCTGCTGCGTACTGCGTCTAGAAGAGCTGCAGACGTTGCGAGGTGTCGAAGCAGTCCTTCTCTCGGCAGCCTTGGCCGGAAAGAGAACAGGG ACGATGATCCTCCTCCTCCTCCTCCATCTCCACCTCCGCTTCATCGGAGGACTCTTCACAGCTTTGCTGGAGCTAGAATCATGGCAGCTGGGTTTGGGTT AGTTCAATCCCCAGGAACAAGTCGTTCCTCCGTTCGGCAGATGTGCATCGGATCTTCTTATTCCCGGCACATGTCGACTGTGGTGGGCGGAGCTTCGGAC GGAATCGGAAGTGTCTCCGACGTCCTCCTAGCCGATGCGTCATCATCCGCTGCGGTTTCTGAAGTCTCAGCTGCTGCAGCTGATTCCTTCTTCCCCGTCG CAGCTCTTCAGCACTTCATTGATGCCATCCATACGTACACTGGATTGAACTGGTGGGCATCCATGGTCGTAGCGACGCTGGTGATCCGAGGAGCTATGCT TCCAATCATCATAAATCAACTGAAAGCCACTGCAAAGCTTAGCGTGTTAAGACCAAAAATAGACGAAATTAATCAGAAGATGCAAGACAAGGGTATGGAA CCCACTGCTGTTGCAGATGGACAAAAGGAAATTAAGAAGCTTTTCAAGGACAATGGCGTGCATCCTTTGACTCCAATGAAAGGGCTCTTCATCCAAGCTC CTGTCTTCGTCAGTTTTTTCCTTGCTATTTCTAATATGGCTGAGAAAATGCCGTCCTTTCAAACTGGTGGTGCTTACTGGTTCCTTGATCTCACTACCCC AGATAGTTTGTACATCTTGCCGGTTTTGACCGGGCTGACATTCTTGATAACTGTTGAGTGCAATATGCAAGAAGGATTGGAAGGAAGTACAGCAGCTGGA ACCATGAAGAAAATTTCTAGGGTGATCGCTGTTGCTACAGTCCCATTGACCATGTCTTTTCAAAAGGCAATATTCTGTTATTGGATCACATCAAACTTGT ATTCACTCGGATATGGCCTCGTATTGAAAGTTCCAGGGGTGAAGAAGACATTGGGGATTCCTGAAATCCAAGCAATGCCTACTACGTCAAGTACTTCTGC TCCCCAGTCATTCGATCTGTTTTCGGCAATTAAAAAGGCTGCAGCCGCGGCCAAGGCGGCGTCTGGATCATCACAGCCGACGGCAGCAACTGCAATGACG GCGGGGGGGGGGGGGGCAGATATCACAACCAAAATTTACAGACAACAGATTATCGTCTTCTCCACGGTCGGCTGTGAGTGA
AA sequence Show only first row Show all	>Lus10001639 pacid=23145993 polypeptide=Lus10001639 locus=Lus10001639.g ID=Lus10001639.BGIv1.0 annot-version=v1.0 MAYLLRTASRRAADVARCRSSPSLGSLGRKENRDDDPPPPPPSPPPLHRRTLHSFAGARIMAAGFGLVQSPGTSRSSVRQMCIGSSYSRHMSTVVGGASD GIGSVSDVLLADASSSAAVSEVSAAAADSFFPVAALQHFIDAIHTYTGLNWWASMVVATLVIRGAMLPIIINQLKATAKLSVLRPKIDEINQKMQDKGME PTAVADGQKEIKKLFKDNGVHPLTPMKGLFIQAPVFVSFFLAISNMAEKMPSFQTGGAYWFLDLTTPDSLYILPVLTGLTFLITVECNMQEGLEGSTAAG TMKKISRVIAVATVPLTMSFQKAIFCYWITSNLYSLGYGLVLKVPGVKKTLGIPEIQAMPTTSSTSAPQSFDLFSAIKKAAAAAKAASGSSQPTAATAMT AGGGGADITTKIYRQQIIVFSTVGCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001639 [exp]	0	1
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	6.0	0.8471
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016066 [exp]	13.4	0.7858
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	25.3	0.8265
AT4G12010			Disease resistance protein (TI...		Lus10028058 [exp]	42.4	0.8398
AT1G13160			ARM repeat superfamily protein...		Lus10006236 [exp]	71.8	0.8212
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	90.4	0.8142
AT1G61240			Protein of unknown function (D...		Lus10011228 [exp]	92.6	0.8190
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	95.4	0.8196
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	105.4	0.7831
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	125.7	0.7844

Compare expression of checked genes

Lus10001639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.