Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 193 / 9e-62 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 181 / 4e-57 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29460 172 / 1e-53 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29490 170 / 6e-53 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29480 170 / 7e-53 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29450 168 / 4e-52 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29440 166 / 4e-51 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT2G29470 165 / 6e-51 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G59700 146 / 2e-43 ATGSTU16 glutathione S-transferase TAU 16 (.1) AT1G78380 145 / 3e-43 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040764 [exp] 244 / 6e-82 AT2G29420 229 / 6e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 237 / 5e-79 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016471 [exp] 234 / 5e-78 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 229 / 5e-76 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016467 [exp] 205 / 2e-66 AT2G29420 207 / 2e-67 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021103 [exp] 199 / 4e-64 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10040727 [exp] 196 / 5e-63 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 189 / 2e-60 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10017208 [exp] 169 / 3e-52 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070900 [exp] 183 / 6e-58 AT2G29420 221 / 9e-73 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 167 / 1e-51 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.016G023200 [exp] 162 / 9e-50 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.016G023340 [exp] 159 / 2e-48 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 156 / 1e-47 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G104500 [exp] 154 / 1e-47 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G035500 [exp] 154 / 2e-46 AT1G10370 301 / 2e-104 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.006G024200 [exp] 152 / 6e-46 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G032800 [exp] 152 / 8e-46 AT1G10370 303 / 3e-105 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) Potri.001G437400 [exp] 150 / 4e-45 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001640 pacid=23145991 polypeptide=Lus10001640 locus=Lus10001640.g ID=Lus10001640.BGIv1.0 annot-version=v1.0 ATGGCGGACGAGCTGAAACTACTTGGATTGTGGGCGAGTCCGTACAGCAAAAGAGTCGAATTAGTCCTGAAACTGAAATCCCTGCAGTTCGAGTATGTCG AAGAATCAGGTTTAAGAACAGAGGAAAATTCCAGCAAGAGTGCTCTTCTCCTTGAATCCAACCCTGTGTTGAAGAAGATCCCTGTGTTCTTCCACAACGG GAAGAAGATCGCAGAATCGATGATTATCGTCGAGTATATCGACGAGATCTGGCGGCAGAGGTGCCCTGTTCTTCCTGAAGATCCTTGTGATAGAGCCGTA GCTCGTTTCTGGGCTAAATTTATCGATGAAACGATTCTGCCGGTAGCCTGGAAGGTATACGCAGGGGAAGGGAAGGAGAAAGAGGAAGCCGCTGAAGAAT TCACCAGCCTGCTGAAGTTGCTGGAAGCAGAGCTGAAAGGGAACGACTATTTCGGAGGGGAACGAATCGGGTTTCTCGATGTCGCTGCAATCCAATTGCA TTTCTTCGAATCGTTACAGGAAGAAGATGGTGATGATGATCGGTTGATGACTCCGGAGAAGTTTCCTGCTCTGTTCAAATGGCTGGAGAAGTTTCGGGCA AATGACGCCGTCAGAGAATGCTTGCCGCCGGCGGATAAGCTTCTCGATTACTCTCGAGCTCGCCGGGCTGCTGCTTTACAAGGATCTGCTCCCAAATGA
AA sequence Show only first row Show all	>Lus10001640 pacid=23145991 polypeptide=Lus10001640 locus=Lus10001640.g ID=Lus10001640.BGIv1.0 annot-version=v1.0 MADELKLLGLWASPYSKRVELVLKLKSLQFEYVEESGLRTEENSSKSALLLESNPVLKKIPVFFHNGKKIAESMIIVEYIDEIWRQRCPVLPEDPCDRAV ARFWAKFIDETILPVAWKVYAGEGKEKEEAAEEFTSLLKLLEAELKGNDYFGGERIGFLDVAAIQLHFFESLQEEDGDDDRLMTPEKFPALFKWLEKFRA NDAVRECLPPADKLLDYSRARRAAALQGSAPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	0	1
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	3.5	0.9254
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	3.9	0.8956
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	4.9	0.9037
					Lus10036864 [exp]	4.9	0.8745
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	6.0	0.9056
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	9.2	0.9101
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	9.2	0.8704
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10021732 [exp]	9.5	0.8332
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10042493 [exp]	10.9	0.8895
					Lus10014377 [exp]	14.5	0.8603

Compare expression of checked genes

Lus10001640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.