Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74470 767 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021665 [exp] 908 / 0 AT1G74470 784 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10008405 [exp] 514 / 0 AT1G74470 536 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10026772 [exp] 126 / 9e-35 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068801 [exp] 788 / 0 AT1G74470 774 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.009G157700 [exp] 496 / 7e-174 AT1G74470 517 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.004G195800 [exp] 494 / 2e-173 AT1G74470 521 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10001642 pacid=23175234 polypeptide=Lus10001642 locus=Lus10001642.g ID=Lus10001642.BGIv1.0 annot-version=v1.0 ATGACTTCCTCCGTCGCATTCAACTCCTTCACCGGCCTCCGCCACTCCTCCCCCGTCGACCATTCCCAACCATCACTTTCCAAACTCTCCCTCCCTCGCC GCGCCACCCTCCAAATCACCAATGCCCTCTCCAGCCCCAAGCTCCCTAACCGCCCCCTCCGCGTCGCCGTCATCGGAGGCGGACCTGCCGGAGGCGCCGC CGCCGAAACACTCGCCAAGGGCGGGGTAGAAACCTACCTTATCGAGCGGAAGATGGACAACTGCAAGCCCTGCGGTGGCGCAATTCCGCTCTGTATGGTA GGGGAATTTGACCTCCCGATCGACATCATCGACCGCAAGGTCACCAAAATGAAGATGATTTCCCCGTCTAATGTCGCCGTCGACATTGGACGCACTCTGA AGCCCCACGAGTACATAGGAATGGTGAGGCGAGAAGTCCTCGATGCTTACCTCAGAGAGCGTGCGGAAAAGAACGGAGCTAATGTGATCAACGGACTGTT CTTGAAAATGGATCTGCCGGAGAAAGGGAGTAAAACTGCCGGGGGAGTCGATGCGCCGTACGTTCTTCATTATACTGAGTACGACGGCACCAAAGGTGCC ACTGGACAGAAGCGCACCTTAGAGGTGGATGCTGTGATCGGAGCCGACGGAGCCAATTCCAGAGTCGCCAAGTCCATTGGCGCCGGTGACTACGACTACG CCATTGCTTTCCAGGAGAGGATCAAGATCCCCGACGAGAAGATGGTGTATTACGAAGACCTAGCGGAAATGTACGTGGGAGACGACGTCTCCCCGGACTT CTACGGATGGGTGTTCCCCAAATGCGACCACGTTGCAGTAGGAACGGGTACCGTGACGCACAAGGGAGACATCAAGAAGTTCCAGCTCGCCACAAGGAAC AGAGCCAAGGACAAGATCCTCGGAGGGAAAATCATCCGAGTGGAGGCCCACCCGATTCCGGAGCACCCAAGGCCACGTCGAGTGCTGGACAGGGTGGCAT TGGTGGGGGATGCAGCAGGGTACGTGACGAAGTGCTCGGGAGAAGGCATCTACTTTGCGGCGAAGAGCGGGAGGATGTGTGCTGAGGCGATCGTGGAAGG GTCGAAGGAAGGGAAGACGATGGTGGACGAGAGTGACCTGAGGAAGTACTTGGAGAGGTGGGACAAGACGTATTGGCCGACGTACAAGGTGCTGGACGTG CTGCAGAAGGTGTTCTACAGGTCGAATCCGGCGAGGGAGGCGTTTGTGGAGATGTGCGCGGATGAGTACGTGCAGAAGATGACGTTTGATAGCTACTTGT ACAAGAAGGTTGTGCCAGGGAACCCGCTGGAGGATTTGAAACTGGCGGTGAATACGATTGGGAGCTTGGTGAGGGCAAATGCTTTGAGGAGGGAGATGGA TAAGCTTAACGTATGA
AA sequence Show only first row Show all	>Lus10001642 pacid=23175234 polypeptide=Lus10001642 locus=Lus10001642.g ID=Lus10001642.BGIv1.0 annot-version=v1.0 MTSSVAFNSFTGLRHSSPVDHSQPSLSKLSLPRRATLQITNALSSPKLPNRPLRVAVIGGGPAGGAAAETLAKGGVETYLIERKMDNCKPCGGAIPLCMV GEFDLPIDIIDRKVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRERAEKNGANVINGLFLKMDLPEKGSKTAGGVDAPYVLHYTEYDGTKGA TGQKRTLEVDAVIGADGANSRVAKSIGAGDYDYAIAFQERIKIPDEKMVYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRN RAKDKILGGKIIRVEAHPIPEHPRPRRVLDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSKEGKTMVDESDLRKYLERWDKTYWPTYKVLDV LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	0	1
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	1.0	0.9662
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	1.4	0.9477
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	3.9	0.9439
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	5.0	0.9372
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	5.1	0.9232
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	6.0	0.9370
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	6.3	0.9398
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	10.6	0.9199
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015834 [exp]	11.0	0.9148
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10035473 [exp]	12.0	0.9248

Compare expression of checked genes

Lus10001642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.