Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74460 473 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 273 / 2e-89 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 211 / 7e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 204 / 3e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 201 / 2e-61 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 200 / 7e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G28780 199 / 1e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 199 / 2e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 197 / 1e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 195 / 6e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021664 [exp] 620 / 0 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 550 / 0 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 549 / 0 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 270 / 4e-88 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 260 / 5e-84 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016918 [exp] 230 / 3e-72 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 224 / 4e-70 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 222 / 3e-69 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 206 / 4e-63 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068700 [exp] 510 / 0 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 286 / 2e-94 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 266 / 1e-86 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 221 / 6e-69 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 207 / 1e-63 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 204 / 1e-62 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G067600 [exp] 202 / 1e-61 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 200 / 5e-61 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 200 / 1e-60 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 199 / 2e-60 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10001643 pacid=23175240 polypeptide=Lus10001643 locus=Lus10001643.g ID=Lus10001643.BGIv1.0 annot-version=v1.0 ATGAGCACAATCCTGCTGCTACTGATGATCATCCTGGTGAGCATCAATGGGTGCCAATGCAAGACGGTTCAGTTCATATTCGGAGACTCCCTCTCCGACG TCGGTAACAACATCAAACTCCAAAAGAGCCTAGCTCAGGCTAGCTTGCCCTGGTACGGCATCGACTTCGGAAACGGCCTCCCTAATGGCCGCTTCACCAA TGGCAGAACCGTCGCCGACATTATCGGAGACAACGCTGGTCTCCCCAGGCCTCCTGCTTTCCTCGACTCCTCATTGTCAGAGGATGTCATCCTTGACAAA GGTGTCAACTTTGCTTCTGGCGGCGGCGGGATCTTGAACGAAACTGGCGGCCTCTTTAACCAGAGGATTTCGCTGAGCAGGCAGATAGAGCTGTTCCAAG GGACACAAAAGCTGATAGCCAGCAAGATTGGGGAAGAAGAAGCTGACAAGTTTTTCCAAGATGCTAGATATGTTGTGGCATTGGGGAGTAACGACTTCAT CAACAACTACTTGATGCCAATCTACAGAGATTCATGGACTTATAATGACAGGACCTTCGTCGATTACCTCATGGAAACTCTGGGTCTCCAGCTCAAGTTG TTGCATAGTTTGGGAGCGAGGCAAGTGATGGTGTTTGGGCTGGGACCAATGGGTTGTATTCCGCTGCAGAGGGTGCTGAGCTCTTCAGGAGGTTGCCAAG AGAGAACCAACAAGCTGGCTCTAAGTTTTAACAGAGCTGCCGACAAGCTTGTCACCGGTTTGTCTAGAGAGTTAGCTAATGCCACCTTCAGATTTGGGGA TGCCTATGATGTTGTCAACAACTTGATCTCTAATCCTCGCAAATACGGATTCAGCAACTCAGATTCACCCTGCTGTGCGATGGGGAAGATAAGGCCGGCG CTGACGTGCACGCCAGCTTCGAACTTGTGCAAGGATAGGAGCAAATATGTGTTCTGGGATGAATACCATCCGTCAGACAGTGCAAACCAGTTGATCGCCA AAGAGCTGATTAAAAAGTTTGGGTTTCTCAATTCATCTCCCCCGCCTTCCTCTGCACCACTTTCTGCTCCTTCCCCTCACAGCCTCGCTCCTAGTCAATT TGACACCCGCAAGTAG
AA sequence Show only first row Show all	>Lus10001643 pacid=23175240 polypeptide=Lus10001643 locus=Lus10001643.g ID=Lus10001643.BGIv1.0 annot-version=v1.0 MSTILLLLMIILVSINGCQCKTVQFIFGDSLSDVGNNIKLQKSLAQASLPWYGIDFGNGLPNGRFTNGRTVADIIGDNAGLPRPPAFLDSSLSEDVILDK GVNFASGGGGILNETGGLFNQRISLSRQIELFQGTQKLIASKIGEEEADKFFQDARYVVALGSNDFINNYLMPIYRDSWTYNDRTFVDYLMETLGLQLKL LHSLGARQVMVFGLGPMGCIPLQRVLSSSGGCQERTNKLALSFNRAADKLVTGLSRELANATFRFGDAYDVVNNLISNPRKYGFSNSDSPCCAMGKIRPA LTCTPASNLCKDRSKYVFWDEYHPSDSANQLIAKELIKKFGFLNSSPPPSSAPLSAPSPHSLAPSQFDTRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	0	1
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	3.9	0.9164
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10043189 [exp]	3.9	0.8454
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	5.1	0.8459
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	7.7	0.8831
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	8.9	0.8894
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	12.2	0.8845
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	12.6	0.8676
					Lus10014682 [exp]	13.8	0.8601
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	17.7	0.8661
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	19.6	0.8588

Compare expression of checked genes

Lus10001643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.