Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 207 / 4e-68 Protein of unknown function (DUF962) (.1) AT1G74440 204 / 6e-67 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021661 [exp] 327 / 2e-115 AT1G18720 242 / 8e-82 Protein of unknown function (DUF962) (.1) Lus10030447 [exp] 189 / 3e-61 AT1G18720 256 / 2e-87 Protein of unknown function (DUF962) (.1) Lus10036771 [exp] 182 / 2e-58 AT1G18720 250 / 3e-85 Protein of unknown function (DUF962) (.1) Lus10021660 [exp] 178 / 1e-56 AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 74 / 4e-17 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1) Lus10001647 [exp] 58 / 4e-11 AT1G18720 62 / 7e-13 Protein of unknown function (DUF962) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088800 [exp] 202 / 4e-66 AT1G18720 245 / 4e-83 Protein of unknown function (DUF962) (.1) Potri.010G166500 [exp] 194 / 3e-63 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [flax] [poplar] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Lus10001646 pacid=23175229 polypeptide=Lus10001646 locus=Lus10001646.g ID=Lus10001646.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGGCAGGAATCCTGGACGTGGAGACCCACTTCGCCTTCTACGGAGCTTACCACTCCAATCCGATCAACATTCTGATCCACACCCTGTTCG TCTGGCCGATTTTCTTCACCACGCTCATGCTTTTCTACTACACTCCCTCATTCTTCGATTTCCCTCAAATTGGGCTCCTGGGTCAGCAGCCTCCTCTGGT TTTGAATTTCGGCTTCTTTTTCGCTCTCTTCTACTCCCTATTTTACTTGGTCTTGGATTTCAAAGCTGGTTGTGTGGCTGCTTTGCTCTGCCTTTCCTGC TGGGTTGGCTCCAGTTTCGTCTGTGCCTCCCTTGGCTCTTCTCTCGGTTGGAAGGTGGCAGCTGGGGTGCAGCTGTTTTGCTGGATAACTCAGTTCATTG GCCATGGTGTGTTTGAGAAACGAGCTCCTGCTATACTCGACAACCTTGCTCAAGCGATCCTCACCGCACCATTTTTCGTATTGCTCGAGGTGCTTCATCA GCTATTCAATTACGAACCATATCCAGGGTTCCAGGATAGTGTGAAGGCCAAGTCAGCAGTTGAGATCCAGAAGTGGAAAGAGATGAAGAAGCAAAAGAGT AAATAG
AA sequence Show only first row Show all	>Lus10001646 pacid=23175229 polypeptide=Lus10001646 locus=Lus10001646.g ID=Lus10001646.BGIv1.0 annot-version=v1.0 MGKKAGILDVETHFAFYGAYHSNPINILIHTLFVWPIFFTTLMLFYYTPSFFDFPQIGLLGQQPPLVLNFGFFFALFYSLFYLVLDFKAGCVAALLCLSC WVGSSFVCASLGSSLGWKVAAGVQLFCWITQFIGHGVFEKRAPAILDNLAQAILTAPFFVLLEVLHQLFNYEPYPGFQDSVKAKSAVEIQKWKEMKKQKS K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18720			Protein of unknown function (D...		Lus10001646 [exp]	0	1
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	2.0	0.7188
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	4.6	0.7646
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	14.5	0.7327
AT2G40070			unknown protein		Lus10002493 [exp]	24.5	0.6449
					Lus10038470 [exp]	26.2	0.6573
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	27.3	0.7189
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	31.0	0.6912
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	32.3	0.6947
AT1G17665			unknown protein		Lus10006153 [exp]	33.2	0.6536
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	33.5	0.7097

Compare expression of checked genes

Lus10001646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.