Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61430 340 / 2e-116 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 331 / 4e-113 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 291 / 4e-98 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G29035 283 / 2e-94 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT3G04060 273 / 4e-90 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G18270 269 / 1e-88 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G53950 263 / 8e-86 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15170 257 / 3e-84 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 253 / 2e-82 NAC ANAC058 NAC domain containing protein 58 (.1) AT2G24430 239 / 4e-77 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021659 [exp] 567 / 0 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10005537 [exp] 265 / 2e-87 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10026879 [exp] 265 / 1e-86 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10003435 [exp] 255 / 6e-83 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10009029 [exp] 248 / 4e-80 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10020165 [exp] 248 / 1e-79 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009669 [exp] 246 / 2e-79 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10041924 [exp] 239 / 8e-79 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10026966 [exp] 243 / 1e-77 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001400 [exp] 355 / 3e-122 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 354 / 1e-121 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.017G086200 [exp] 322 / 3e-109 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 288 / 4e-95 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.013G054200 [exp] 280 / 3e-92 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.001G396300 [exp] 260 / 2e-85 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G115400 [exp] 260 / 9e-85 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G003800 [exp] 251 / 3e-81 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 248 / 6e-81 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 249 / 7e-81 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10001648 pacid=23175237 polypeptide=Lus10001648 locus=Lus10001648.g ID=Lus10001648.BGIv1.0 annot-version=v1.0 ATGGAAAACAACGTTGCGTGTGGAGTTGAGATGGTGATGGAGGAAGAAGATGACCAGATGGATTTGCCACCTGGGTTCCGTTTCCACCCTACTGATGAAG AGCTCATCTCCCATTATCTCTACAACAAGGTCATCGATGTCAGATTCTCCTGCCGAGCCATCGGCGACGTCGATTTGAACAAGTCTGAGCCCTGGGAACT TCCCTGGAAAGCGAAGATGGGGGAGAAAGAGTGGTATTTCTTCTGCGTTCGAGATAGGAAGTACCCAACTGGGCTGAGGACGAACAGAGCAACGGAAGCT GGGTACTGGAAAGCTACAGGGAAAGACAAGGAGATTTACAGAGGGAAATCTCTGGTTGGGATGAAGAAAACCTTGGTCTTTTACAAAGGAAGAGCTCCCA AGGGGGAGAAATCCAATTGGGTTATGCACGAGTACAGATTAGACGGCAAATTCTCCATCCACAACCTCCCCAAAACCGCCAAGAATGAATGGGTGATATG CAGGGTATTCCAGAAGACTTGCGGCGGGAAGAAGATTCACATCTCCGGAATCACACGATTCGGAGAGTTGCAGGGTCATCATCATAATTCTTCGACCATG TTGCCGCCGTTGATGGAATCACCTTCAGCTAATTACGATCAGAAATTTACAATTAAGCCAGCCGTAGCTGCAGAATCTTCTTCAGCTTACGTGCCCTGCT TCTCCAATCTCATTACCAACATGAACACAACCAACAATTCATCAACATCCTCCTCTCAATTTCTATCTAATCCAATAATTCCTTCATCATCCTCTTCTTC AATCCCTCTCTTCCCATCTTCTCATTACAATTCCCAGTTGATCCCTTCCGCTAATTTCGGCCAATACAACGACAACTCCATCCTACTCCGAGCTCTGATG GCGGATAAACAAGGAGGAGGAGGAGGGTCGACGTTGAATCTGATGAACAGTACTGAGATTTCTCCGTCGGTTACTGGACCAGTGGATCTCGACTCTATTT GGGACTATTAA
AA sequence Show only first row Show all	>Lus10001648 pacid=23175237 polypeptide=Lus10001648 locus=Lus10001648.g ID=Lus10001648.BGIv1.0 annot-version=v1.0 MENNVACGVEMVMEEEDDQMDLPPGFRFHPTDEELISHYLYNKVIDVRFSCRAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEA GYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLDGKFSIHNLPKTAKNEWVICRVFQKTCGGKKIHISGITRFGELQGHHHNSSTM LPPLMESPSANYDQKFTIKPAVAAESSSAYVPCFSNLITNMNTTNNSSTSSSQFLSNPIIPSSSSSSIPLFPSSHYNSQLIPSANFGQYNDNSILLRALM ADKQGGGGGSTLNLMNSTEISPSVTGPVDLDSIWDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	0	1
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019020 [exp]	1.4	0.9200
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	1.4	0.9245
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10002578 [exp]	3.2	0.9079
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	4.6	0.9159
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	10.1	0.9053
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	15.2	0.8978
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	15.6	0.8976
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	18.7	0.8930
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	19.9	0.9100
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	23.0	0.8586

Compare expression of checked genes

Lus10001648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.