Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18700 688 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) AT1G24120 45 / 0.0002 ARL1 ARG1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021658 [exp] 1184 / 0 AT1G18700 657 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Lus10017263 [exp] 46 / 2e-05 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003149 [exp] 42 / 0.0006 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112200 [exp] 895 / 0 AT1G18700 746 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Potri.004G102875 [exp] 50 / 1e-07 AT1G18700 50 / 9e-09 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Potri.008G193500 [exp] 44 / 0.0004 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.010G036200 [exp] 43 / 0.0007 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.007G107600 [exp] 41 / 0.0007 AT3G13310 109 / 4e-31 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001649 pacid=23175230 polypeptide=Lus10001649 locus=Lus10001649.g ID=Lus10001649.BGIv1.0 annot-version=v1.0 ATGGCCGGCGACGGAACTAACCCGCCGACCTCGTCGATGGCGTCCAGGATCAAAGCCTACGCTTTGCCTCTTCTTCTTTTCTCACTTTCGCTCTTCTATC AGCTTGCTGTTCTTCCCAACTCTTTCCCGCCTTCCCACTACGACGTTTTGGGGATCAAACGGTTTAGCTCAGTCGAAGAAGTGAAGGTTGCTTATGAGAG CCTCTATTCCAAGTGGAAATCTGGCGAGGAGGTTCCTACCACTGTTGATTTTCTGGAGGTCCAATATGCTTTTGAGTTGCTGAAGAACCCCATATGGAAA AGGGATTATGACTTGTTTGGTATTGATGAACAACTCGATCTTCTTGAGAAGGCTAAAGTTCAATATGCAGAATCAGGCTTTTCAAATGTAGACCTTCCGT TGCTTGATGATACTTCTTCTGTAGATCTAGCTCTAGATGGGATTTCATCTTGGGATGTAGCAACTAATAATTCTAAGCCACTTCTTCTTCTGGTGTATTC CAAAGGAAGCAACCGTTGTGCTAAATTTCTTGAAGCATGGAAGCGAATTGCTGCTTTTCTGGATGGAACTGCTAGTATTGGCGCAGTGGAAGTTGGTGAC ATGGAAGTTGCCGCATCATTTGCTGAGACAAAGCCAACAGGGCAGTTTTTCTTCAGAAATGGTCTCCCTTCCCTCGTTGCACTCCCTTCGGGCTGTCGAA GTTCAAAATGTCTTGTGAGGTTTGATGGTGATCTATCTGTTGATGCTGTCACGGACTGGTTTGCAACTTCTATACTAGGCTTACCACGAATTTTGTACTA TTCGAAGGAAGCACTAGCACAGAACTTCATGGCAAAGAGTGGTCCCCATAAGGTGAAAGTAATTTTTTTCTCTAAAACAGGAGAGCGTGCTGCTCCATTT GTTCGTCAAGCTGCTAAAGACTATTGGGCACATGCGTCTTTTGCATTTGTCTTATGGCGTGAAGAAGATTTTTCCTTCTGGTGGAATTCGTTTGAGGTTG AATCTGCCCCAGCTGTTGTCTTTATTAAAGATCCAGGTCTTAAACCACTAGTCTTTCATGGTTCTCTCAACAATTCATTGCTTCTGGATCTGATGGAAAA ACATAAAGAGCATGAACTTCCACAGCTAAGAAGCGCAACATCCATGAACCTTGGTTGTGATGCCCGCGGATACTCTCGAGCTGGAAGTGATACTATATCA TGGTATTGTGTTATTGTAGCAGGGAGACTGAGTACAGAACTTAACAAAATGCGACAAACCTTGCGCAGGGTGAAAGAACTGCAGTCCAGCGGTGGTGAAC TGGATGTTGATAAAGAGCAAACTTCAGTGTTGGTAACTGCAATGGAAAGTAAGCGGTTGACGTTTGCATGGCTTGATGGGGAAGCTCAAGAGAAATATTG TTCGTTCTACCTTCATTCAGAAACCAGCTATGACACTTGTGGACCTAGGAGGGATATGGTTGACATACCTAGATTATTTCTAGTACGTTACAAAAGGAAT GATACTGAAGCTAGTATTGAGGCTGAAAAAACTCGAAAGAACCAATGGCATGCTCTACTACACGAGGAAGTGGATCCTGCGTCGCAGCTGGTCGCTCGAT ACAATGGTTCGAGTGAGATCCCAGAGATCATCAAGTGGATCTCTCAAACAATAAGTGATGGTGAATCCAGGGATCTCCCTTTCTATAGAACCAGAACCCC TGAGCTTGTACCTGAGGATTCAGAACCCATGTGGTCAAGAGGTGCCCAAAGTGTTCTTTCGAAAGGCGCTGGGATCAAGCACAGCTTCCGAAGAGTCATG AGCAGAGTTTCAGATCACTTTGGAGATCCAAGGATAGGACCAATGCTACTACTGGGAGCTCTAATGTCTTTCGGAACCATATGGTTGAGCAGGAGCCAGA GCAAACAAAAACCTAAAACTCAACCAGGCCAACAGAACGAATCGACGAAAAAGGATGAAGCTGGAACTAGGCGAAGAGGACGACCAAGAAACGCGTCGAG GAAAGATCAACCACCCTCCATGACTGACACGGAGCCCAAAGATGCTTACGAGATGCCATTCTCAGATTCTGACTCAGAGTAG
AA sequence Show only first row Show all	>Lus10001649 pacid=23175230 polypeptide=Lus10001649 locus=Lus10001649.g ID=Lus10001649.BGIv1.0 annot-version=v1.0 MAGDGTNPPTSSMASRIKAYALPLLLFSLSLFYQLAVLPNSFPPSHYDVLGIKRFSSVEEVKVAYESLYSKWKSGEEVPTTVDFLEVQYAFELLKNPIWK RDYDLFGIDEQLDLLEKAKVQYAESGFSNVDLPLLDDTSSVDLALDGISSWDVATNNSKPLLLLVYSKGSNRCAKFLEAWKRIAAFLDGTASIGAVEVGD MEVAASFAETKPTGQFFFRNGLPSLVALPSGCRSSKCLVRFDGDLSVDAVTDWFATSILGLPRILYYSKEALAQNFMAKSGPHKVKVIFFSKTGERAAPF VRQAAKDYWAHASFAFVLWREEDFSFWWNSFEVESAPAVVFIKDPGLKPLVFHGSLNNSLLLDLMEKHKEHELPQLRSATSMNLGCDARGYSRAGSDTIS WYCVIVAGRLSTELNKMRQTLRRVKELQSSGGELDVDKEQTSVLVTAMESKRLTFAWLDGEAQEKYCSFYLHSETSYDTCGPRRDMVDIPRLFLVRYKRN DTEASIEAEKTRKNQWHALLHEEVDPASQLVARYNGSSEIPEIIKWISQTISDGESRDLPFYRTRTPELVPEDSEPMWSRGAQSVLSKGAGIKHSFRRVM SRVSDHFGDPRIGPMLLLGALMSFGTIWLSRSQSKQKPKTQPGQQNESTKKDEAGTRRRGRPRNASRKDQPPSMTDTEPKDAYEMPFSDSDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	0	1
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	1.4	0.9659
AT2G32970			unknown protein		Lus10030016 [exp]	2.6	0.9728
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	7.5	0.9643
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	11.0	0.9577
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	14.2	0.9526
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	14.5	0.9457
AT1G72490			unknown protein		Lus10015679 [exp]	16.5	0.9521
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	24.9	0.9330
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	25.4	0.9284
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	26.0	0.9160

Compare expression of checked genes

Lus10001649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.