Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45240 637 / 0 MAP1A methionine aminopeptidase 1A (.1) AT1G13270 250 / 3e-80 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT4G37040 246 / 6e-79 MAP1D methionine aminopeptidase 1D (.1) AT3G25740 223 / 8e-70 MAP1C, MAP1B methionine aminopeptidase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021657 [exp] 769 / 0 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10021701 [exp] 253 / 5e-81 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10011514 [exp] 250 / 2e-74 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 248 / 2e-73 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10035045 [exp] 229 / 3e-72 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10003379 [exp] 50 / 3e-06 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 49 / 4e-06 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 48 / 1e-05 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10005046 [exp] 42 / 0.0007 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067300 [exp] 657 / 0 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.005G137400 [exp] 253 / 9e-82 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.008G117200 [exp] 241 / 9e-77 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.013G007100 [exp] 48 / 9e-06 AT1G09300 643 / 0.0 Metallopeptidase M24 family protein (.1.2) Potri.006G102200 [exp] 45 / 8e-05 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 44 / 0.0002 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10001650 pacid=23175233 polypeptide=Lus10001650 locus=Lus10001650.g ID=Lus10001650.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGCACCGATGTTGCGGCACTCTCCTGTTCTAAATGCAGCAAACCTGCAAATCTTCAGTGTCCAAAGTGTGTCGAACTAAAGCTTCCTCGTG AAGGTGCTGCATTCTGCACTCAGGATTGTTTTAAGGCTTCATGGAGCTCTCATAAATCTGTTCATTTGAAGGCAAAGCAATCCACCACCGGGGCAGGAAC ACTAGATAGCACAAAGTCCAGCTTGCCCGAGGGTTGGTTATATTGCTTGAGGAGAGGGCAGAGTCGAACTTCACAACTTCCTTATTTTGATTGGACAGGG TCACTAAGGCCGTTTCCTATTTCACCAAAGCGCATTATACCAGCCCATATTGATCAGCCAGATTGGGCAGTAGATGGCACACCCAAAATCGAACCTAATA GTGATCTTCAACATTCTGTGGAGATAAAAACTCCAGATCAAATTCAGAAAATGCGAGAAACTTGCAGAATTGCAAGAGAGGTTTTGGATGCTGGTGCGAG GATAATTGCTCCTGGTGTGACAACCGATGAAATTGATCGAGTGGTTCACGAGGCAACTATTGCAGCGGGAGGTTATCCATCTCCTCTGAACTATCACTTT TTCCCAAAATCATGCTGCACGTCCGTCAATGAAGTAATCTGCCATGGAATTCCCGATGCTAGGAAGTTAGAGGATGGTGATATTGTAAACATTGATGTAA CTGTGTGCTACAATGGTGTTCATGGTGATCTTAACGAGACATATTTTGTTGGAAATGTTGACGAAGAGTCTCAAAAGCTTGTTCAGTGCACTTACGAGTG CTTGGAGAAAGCGATCCAAATTGTTAAACCTGGAGTGCGATTTCGCGAAGTTGGAGAAGTTGTAAATCGTCATGCCACAATGTCTGGATTATCTGTGGTG AAGTCATATTGTGGTCACGGTATTGGGGAGCTATTCCACTGTGCTCCAAACATTCCCCACTATGCGAGGGTTTGGCGAGATCGGATGTGGCCTGATGGAT GGACTGCTGTGACTGCAGATGGCAAACGCAGTGCTCAGTTTGAGCACACTCTCTTGGTGACAGAGACAGGTGTTGAGGTGCTCACAGCACGACTTCCTAC ATCGCCGAAAATGTTCCCGTGGCTAAACGAATAA
AA sequence Show only first row Show all	>Lus10001650 pacid=23175233 polypeptide=Lus10001650 locus=Lus10001650.g ID=Lus10001650.BGIv1.0 annot-version=v1.0 MAGGTDVAALSCSKCSKPANLQCPKCVELKLPREGAAFCTQDCFKASWSSHKSVHLKAKQSTTGAGTLDSTKSSLPEGWLYCLRRGQSRTSQLPYFDWTG SLRPFPISPKRIIPAHIDQPDWAVDGTPKIEPNSDLQHSVEIKTPDQIQKMRETCRIAREVLDAGARIIAPGVTTDEIDRVVHEATIAAGGYPSPLNYHF FPKSCCTSVNEVICHGIPDARKLEDGDIVNIDVTVCYNGVHGDLNETYFVGNVDEESQKLVQCTYECLEKAIQIVKPGVRFREVGEVVNRHATMSGLSVV KSYCGHGIGELFHCAPNIPHYARVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPTSPKMFPWLNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	0	1
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	4.5	0.8933
AT1G50510			indigoidine synthase A family ...		Lus10009716 [exp]	7.1	0.8976
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	7.3	0.8935
					Lus10005096 [exp]	8.7	0.8961
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	11.6	0.8893
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	21.0	0.8849
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	21.2	0.8427
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	21.4	0.8851
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	22.8	0.8794
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	24.1	0.8591

Compare expression of checked genes

Lus10001650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.