Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61470 167 / 9e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 163 / 1e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 158 / 7e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 160 / 8e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 157 / 3e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT2G32070 154 / 4e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 153 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 150 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G10960 150 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 147 / 2e-41 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017905 [exp] 612 / 0 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 557 / 0 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 554 / 0 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 491 / 8e-175 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 424 / 6e-149 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 417 / 8e-146 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 319 / 1e-108 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017895 [exp] 237 / 3e-77 AT1G06450 98 / 4e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 236 / 3e-75 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 217 / 1e-67 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 164 / 1e-47 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 161 / 8e-47 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 152 / 4e-43 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 150 / 2e-42 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 148 / 1e-41 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 147 / 2e-41 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 147 / 2e-41 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 145 / 2e-40 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 142 / 2e-39 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10001651 pacid=23175238 polypeptide=Lus10001651 locus=Lus10001651.g ID=Lus10001651.BGIv1.0 annot-version=v1.0 ATGTTCCGATGGGCGTTTTACAACGGTACACTGCCCGACGATGGGGGTTTTCCAACGGTACACTGCCCGACGCGTTTTCCTACGGCTAACTTGCGGTGCC CGGCTGACCGACTCTTTACATACCAAACAAAGAATCTCTCATTTCCTTTCCCTGCTCCTTCTTTCTCTCCGCCGACAACATTGCAGATTACACTTTCTCT TTCTCTTCTTCTTACATTACTACAAACAATGGCTATGAGAGAAGTCTGGAACCATAATTTCGACCAAGAACTGCACGCCATGGAAGTCTGTTTGAGAAGC TACCCAGTAGTGTCGGTGGACACTGAATTCCCAGGTTGCCTCCGTCCGACACCGAGGTACGCTTCCGAGGAACTCCGATTTCAGAACTTGAAGTACAACG TCGGCGCAACCTCTCTGATTCAATTAGGGCTCACTCTGTCCAACTTCGAGGGCACCGTCGGCGGAATCTGGCAATTCAATTTCCAATTCGACCTAGACCA CGACCTTCACTGCCCAAATTCAATGCAGTTCTTGATCCTCCACGGCATCGATTTCAACAAACTGAAAACCCACGGGATTGACCGGGTCAAATTCGGCACG GCGTTCGGGAGGCTGATTGCGACAAGGCGGAGTCCGATTACGTGGATCACTTTCCACGGAGTTTACGATTACGCCTATCTCGTGAAGGCGGTGACTTCCC GTCCGGTTGCGGAATCATCGGCGGAATTCGTTAATTTTTTGGGGATCGGGTTTGATTCGGTGGTGGATTGCAAGTACATGGCTAAGTTCTATGAAGAGAC CGGGAGTGAAATTGGGTTGCAGAAGTTAGCGGATGCTTTGGGGGTTAAGAGAAGAGGGGAGGCTCATACTGCCGCCTCTGATAGTTTGTTGACGGCGCTG GTTTACTTTGAGTTGAAGAAGAAACTGATGCTGTTGGGTGTTGATGAAGAGTCTTACGTTGATTACGTCTATGGAATCAGCACCAAAATCTCCAGGAAGC AGAAAGAGCCCCTCTTTCTACCAACTGCTCCACCAGGTCCTGTGTATCATCATCATCATCATCCTTATCCTCCTCATCTTTATCCTCGTAAGGTGCTGTA TCCCATTCCATATCAGCATGGAGTCTTGCCTCCGAATGTGATGATGGGTCGTCGTTGGGTTGATTGCTCATTAGCTCCAACAGTATTAGTTCCCTCTTTC ATCTACTGA
AA sequence Show only first row Show all	>Lus10001651 pacid=23175238 polypeptide=Lus10001651 locus=Lus10001651.g ID=Lus10001651.BGIv1.0 annot-version=v1.0 MFRWAFYNGTLPDDGGFPTVHCPTRFPTANLRCPADRLFTYQTKNLSFPFPAPSFSPPTTLQITLSLSLLLTLLQTMAMREVWNHNFDQELHAMEVCLRS YPVVSVDTEFPGCLRPTPRYASEELRFQNLKYNVGATSLIQLGLTLSNFEGTVGGIWQFNFQFDLDHDLHCPNSMQFLILHGIDFNKLKTHGIDRVKFGT AFGRLIATRRSPITWITFHGVYDYAYLVKAVTSRPVAESSAEFVNFLGIGFDSVVDCKYMAKFYEETGSEIGLQKLADALGVKRRGEAHTAASDSLLTAL VYFELKKKLMLLGVDEESYVDYVYGISTKISRKQKEPLFLPTAPPGPVYHHHHHPYPPHLYPRKVLYPIPYQHGVLPPNVMMGRRWVDCSLAPTVLVPSF IY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	0	1
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	2.0	0.8206
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	8.2	0.7989
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	8.3	0.7904
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	8.4	0.7693
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	9.8	0.7802
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	13.7	0.7740
AT3G18510			unknown protein		Lus10042971 [exp]	13.8	0.7801
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	14.0	0.7788
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	15.4	0.7338
AT3G26350			unknown protein		Lus10011406 [exp]	17.2	0.7689

Compare expression of checked genes

Lus10001651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.